Burkholderia ambifaria MC40-6: BamMC406_1468
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Entry
BamMC406_1468 CDS
T00684
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BamMC406_1468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bac03019
]
BamMC406_1468
03016 Transfer RNA biogenesis [BR:
bac03016
]
BamMC406_1468
Enzymes [BR:
bac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BamMC406_1468
Messenger RNA biogenesis [BR:
bac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BamMC406_1468
Transfer RNA biogenesis [BR:
bac03016
]
Prokaryotic type
tRNA degradation factors
BamMC406_1468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
WHD_RNase_R
CSD
PF0610-like_N
Motif
Other DBs
NCBI-ProteinID:
ACB63955
UniProt:
B1YPH8
LinkDB
All DBs
Position
1:1635301..1637754
Genome browser
AA seq
817 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFGQRALDDAAALPDAV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPTKVGRGDGYRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADLLPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHAGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGEKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKAPDGFELNTALSPR
ARAMQQADDEARGRSRVNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPAPAPVAVGNGNDRGGPRVRSLPPVEEAAPRRK
RTASAPTAAVHDTRAAKKKGGAPAKTAAKKTHARKKY
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgacatcgccgaagcgctgtcgatcaagcgccaggaa
cgcgaggggttcttccggcgtgtcgccgcaatggaacgcgacggccagatccgcctcgac
aagcgcggccactaccagctcactcatccgtcgaacttcgttgccggtcgcgtgcaagga
caccgcgacggctacggcttcgtgatccgcgacgacggccaggacgacctgttcttgccg
aacggcgagatgcagaaggtgatgcacaacgaccgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccggccggaaggccatgtcgtcgaggtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtcgcccccgaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gtcgtcgaactgaccgatttcccgagccgccattcgcaaccgctcggccgcgtcgtagaa
gtgctcggcgatatcgacgatccaggcatggaaatcgagatcgccgtgcgcaaatacggc
gtgccgcacgaattcggccagcgggcgctcgacgatgccgccgcgctgccggacgcggta
cgtccggccgacctgcgcttccgcgtcgatttgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcccgcgacttcgacgatgccgtctactgcgagccgaccaaggtcgggcgc
ggcgacggctaccgcctgatcgtcgcgatcgcggacgtgtcgcactacgtgcagccgggc
agcggcctcgacgccgacgcgctggagcgcagcacgtcggtctatttcccgcggcgcgtg
atcccgatgctgccggagaagctgtcgaacgggctgtgctcgctgaatccgcaggtcgac
cgctgcgtgctcgtgtgcgacatggtgattaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggcggtcatccattcggccgcgcgcctgacgtacaccgaagtcgcggccgtg
ctgtcgaacacgaaggggccggaggccgcgcgccgcgcggacctgctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcacgccagaagcgcggcgcgatcgac
ttcgacacgaccgagacgtacatcgtctgcaactcgcagggcaagatcgaacagatcgtg
ccgcgtcagcgcaacgatgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgacttccttaagcgcaacaagcatgcgggcctgtaccgcgtgcacgcgggg
ccgacgccggaaaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggtgagaagccgcatgcgagcgactatgcggcgctgatggcgcagattcgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggccgtctac
agcccggacaacatcggccacttcggtctcgcgtatgaggcgtacgcgcacttcacgagc
ccgatccgccgctatcccgacctgctcacgcaccgcgcgatctacgcgatcctgtcgggc
aagaagtacacgccgaaggcaccggacggcttcgagctgaacaccgcgctgtcgccacgc
gcccgcgcgatgcagcaggccgacgacgaagcgcgcggccgttcgcgcgtgaacaccgcg
atctgggaagagctcggcctgcattgctcggcgaacgagcggcgtgccgacgaagcgtcg
cgcgacgtcgaggcctggctcaagtgctacttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaacgagctgcgcggcgagcgcacgggcatccgttatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgacttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgtcccgcaccggcgccggttgctgtcggcaacggcaacgat
cgcggcggcccgcgcgtgcgctcgttgccgccggtggaggaagccgcgccgcgtcgcaag
cggacggccagcgcaccgaccgccgcggtgcacgacacgcgtgcggcgaagaagaagggc
ggcgcgccggcgaagacggccgcgaagaagacacacgcccgcaagaagtattga
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