KEGG   Burkholderia ambifaria MC40-6: BamMC406_1718
Entry
BamMC406_1718     CDS       T00684                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bac  Burkholderia ambifaria MC40-6
Pathway
bac02024  Quorum sensing
bac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BamMC406_1718
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BamMC406_1718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bac03019]
    BamMC406_1718
   03036 Chromosome and associated proteins [BR:bac03036]
    BamMC406_1718
Messenger RNA biogenesis [BR:bac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BamMC406_1718
Chromosome and associated proteins [BR:bac03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BamMC406_1718
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ACB64203
UniProt: B1YR39
LinkDB
Position
1:complement(1920759..1921001)
AA seq 80 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEATTS
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgcaaagagcac
gttcccgtttcgatctatctcgtcaacggcatcaagctccaagggaacatcgaatcgttc
gaccagtacgtcgtgttgctccgtaatacggtgacccagatggtctacaagcacgccatc
tcgacggtcgtgccggcgcgcccggtgaatttccacccggacgcggaagcgaccacgtcc
taa

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