Burkholderia ambifaria MC40-6: BamMC406_1859
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Entry
BamMC406_1859 CDS
T00684
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BamMC406_1859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_1859
Enzymes [BR:
bac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BamMC406_1859
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BamMC406_1859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACB64341
UniProt:
B1YS12
LinkDB
All DBs
Position
1:2071318..2074788
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASIPFASPVARVKPGQRFAFDGTHGSADALAIARYLAENRAAVPLLAVICANAVDA
QRLSQELRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLAHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATGLP
ELTVDRHADDPLAALRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ESDAPFALGVAPLANGFVVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFVDRFAEWPVRIVELSRFKTTKEVNAAIAQINEGTVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPRADAATAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccatcccgttcgcctcgcccgtcgcccgcgtcaaaccgggccag
cggttcgccttcgacggcacgcacggctccgccgacgcactcgccatcgcccgctatctc
gccgagaaccgcgcggcggtcccgctccttgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctgtcgcaggaactccgctacttctcgcccgatgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtctccgagcgg
cttgcgacgctgcacgacctcggcgagggccgctgcgacatcctgctggtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacaccttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctggccggctacgaa
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctc
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgatcccgatacgcagcgcagcctctacccggttcgcgacgtgcgcctg
ttgcccggccgcgagtttccgttcgacgaagccgcgcgcacggcctttcgcagccgctgg
cgcgagaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtactacctgccgctgttcttcgacgagacggccacgctg
ttccactacctgccgcaggacgcacacctcgtgttcaccggcgatctcgaggcgtcgatc
cgccgcttcacggctgatacgaaacagcgccacgcgttcctcgcgcacgaccgcgagcgg
ccgatcctcgagccgcagcgcctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcgacgggcctgccc
gagctcacggtcgatcgccatgccgacgatccgctcgccgcgctgcgcacgttcgtcgaa
tcatcgggcaagcgcgtgctgctgacggtcgaatcggccggccgccgcgaaacgatcctg
caactgctcgccgagcatcacctgcgccccgcgtcgaacgaccacttcgcgggctggctc
gaaagcgatgcaccgttcgcgctcggtgtcgcgccgctcgcgaacggcttcgtggtgccg
ggcgaaggctacgcgatcgtcaccgaaaccgaactgtacggcgcgctcggccggcgcgcg
ggccggcgccgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgagaccgaattcctgcacctcgaatacgcgggcgac
agcaagctctacgtgccggtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcaccgctgcacgcgctcggctcgggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagattcgcgacacggcggccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgagggccatgcgttcgcgctcgatccgcgcgactacgtgaagttcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggccatagcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtcgcgttgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgtcgaccgcttcgcggagtgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccacgaaggaagtgaatgcggcgatc
gctcagatcaacgaaggcaccgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgccttggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgttgacgctgaccgcc
acgccgatcccgcgtacgctcgggatggcgctcgaggggctgcgcgacttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgtcgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctgaaacgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaaccgcagggcgatgctcgaggaactcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgaactcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgccaacacgatcatcatgcaccgcgcggacaagttcggcctcgctcagctt
caccagctgcgcggccgcgtcggccgttcgcaccaccaggcgtatgcgtacctgctggtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggagctcggttcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctgtacacc
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgca
ccgctcgccgcgacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcgtctcgcgaactgcgagcacggc
gacgcaatcgacggcatccaggaagagctgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcaccggctgcggctggccgcgaagccgctcggcatcgtc
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaacccgccgatcgat
ccgatgcggatcatcgaaatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcgcgccgcgcgcagacgccgcgaccgcggcacgctga
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integrated database retrieval system
