Burkholderia ambifaria MC40-6: BamMC406_2170
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Entry
BamMC406_2170 CDS
T00684
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BamMC406_2170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bac03019
]
BamMC406_2170
03016 Transfer RNA biogenesis [BR:
bac03016
]
BamMC406_2170
Enzymes [BR:
bac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BamMC406_2170
Messenger RNA biogenesis [BR:
bac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BamMC406_2170
Transfer RNA biogenesis [BR:
bac03016
]
Prokaryotic type
tRNA degradation factors
BamMC406_2170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0181
DUF5969
Motif
Other DBs
NCBI-ProteinID:
ACB64649
UniProt:
B1YTR1
LinkDB
All DBs
Position
1:complement(2419843..2421987)
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AA seq
714 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLV
VAGTERAVLMVESEADQLPEDVMLGAVVFGHEQMQTAIDAIHELVREGGKPEWDWQPAPK
NEALIARVTELAHGDLLAAYQLRDKQARSTKLKEVYAATSAKLEEDAQAAGTVAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIENITVEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAASQSDTPPQQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccagtggggccagcacaaggtgcgcctc
gaaaccggtgaagtcgcccgccaggcgagcggtgccgtgatcgtcgacgtggaagacacc
gtcgtgctggcaaccgtcgtcggcgcgaagtcggcgaagccgggccaggatttcttcccg
ctgaccgtcgactacctcgaaaagacctactcggccggcaagatcccgggcggcttcttc
cgtcgcgaaggccgtccgtcggaacacgagacgctgacgtcgcgcctgatcgaccgtccg
ctgcgtccgctgttcccggaaggcttctacaacgaagtgcaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcgtcggccgcgctc
gccgtgtcgggcctgccgttcaacggtccggtcggtgccgcgcgcgttgcgtacatcgac
aacgcatacgtgctgaacccgacgcgtgaccagctcaaggcctcgagcctcgacctcgtc
gtcgccggtacggagcgcgcggtgctgatggtcgaatcggaagccgaccaactgccggaa
gacgtgatgctgggcgcggtcgtgttcggccacgagcagatgcagacggcgatcgacgct
atccacgaactcgtgcgcgaaggcggcaagcccgagtgggactggcagccggcaccgaag
aacgaggcgctgatcgcgcgcgtgacggagctggcgcacggtgacctgctcgccgcttac
caactgcgcgacaagcaagcgcgttcgacgaagctgaaggaagtctacgcggcgacctcg
gcgaagctcgaggaagacgcacaggcggccggtacggtcgcggccgacaaggccaccgtc
ggcaacgtcctgttcgacatcgaagcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgcatcgacggtcgcgacacgcgcaccgtgcgtccgatcgagatccgcaccggcgtg
ctgccgcgcacccacggttcggcgctgttcacgcgtggcgaaacgcaggcgctcgtcgtc
gcgacgctcggcacgaagggtgacgagcagatcatcgacgcgctcgaaggcgaataccgc
gagcgcttcatgctccactacaacatgcccccgttcgcgaccggcgaaacgggccgcgtc
ggctcgccgaagcgccgcgaaatcggccacggccgtctcgcgaagcgcgcgctggtcaag
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggaaatcaccgag
tcgaacggctcgtcgtcgatggcgtcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggcatcgcgatgggcctgatcctcgaaggcaac
aagtttgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggccggcacggagcaaggcgtgacggcgctgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacgtcggcggtctcgggtgcgaacacgcaactgtcggaattcgcgccg
cgcatgatcacgatcaagatcaacccggaaaagatccgcgacgtgatcggcaagggtggc
tcggtgatccgcgcgctgacggaagaaacgggcacgaccatcgacatctcggatgacggc
gtcgtgacgatcgcgagcacgagcagcgaaggcatggccgaagcgaagaagcgtatcgag
aacatcacggtcgagatcgaagtcggccaggtgtacgaaggcacggtgctcaagctgctc
gatttcggcgcgatcgtgaacctgctgccgggcaaggatggcctgctgcacatctcggaa
atcgtcaacgagcgcgtgaaggacatcaacgactacctgaaggagggccaacaggttaag
gtcaaggtgatccagacggacgagaagggtcgcgtgcgtctgtcggcgaaggcgctgctg
aacgaagcagcggcgtcgcagtcggatacgccgccgcagcagtaa
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