Burkholderia ambifaria MC40-6: BamMC406_2232
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Entry
BamMC406_2232 CDS
T00684
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03030
DNA replication
bac03430
Mismatch repair
bac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BamMC406_2232
03430 Mismatch repair
BamMC406_2232
03440 Homologous recombination
BamMC406_2232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bac03032
]
BamMC406_2232
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_2232
Enzymes [BR:
bac01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BamMC406_2232
DNA replication proteins [BR:
bac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BamMC406_2232
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BamMC406_2232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
DUF655
Motif
Other DBs
NCBI-ProteinID:
ACB64711
UniProt:
B1YU71
LinkDB
All DBs
Position
1:complement(2484629..2488201)
Genome browser
AA seq
1190 aa
AA seq
DB search
MGSLRDDAATITPMSDPRFVHLRVHSEFSIADGIVRLDDIVKAAAADGQGALALTDLGNA
FGLVRFYQEARGKGIKPIAGCDVWITNPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLT
NQYRGRAELDASWLDGELSQGLLALSGAQQGDIGLAFAAGNEEAARRHAERWAKVFPGGF
YIELQRYGQPGAEAYIQQAATLAASLGLPVVATHPTQFMTDDDFTAHEARVCISEGDMLA
NPRRQKRFTTDQYFRTQDEMVALFADLPSAVANTVEIAKRCNLKLELGKPKLPLFPTPDG
MSLDDYLVQLSKEGLEKRLEQLFPDTAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVA
DFINWAKNNGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDID
FCQHGRDRVIQYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPF
KPGKHVTIADAMKEEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLT
DFCPLYTQGDDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDASKADWS
LAQVPLDDPASFQILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDL
IPSFCARKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAM
GKKKPEEMVKHREIFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTA
WLKAHHPAEFMAANMTLAMDDTDKVKILFDDCVVNNLVVLPPDINQSHYRFEPVGEADGK
RSRTIRYGLGAVKGSGQNAIEEILRAREEKPFTDLFDFCERIDRRVVNRRTVEALIRAGA
FDSLNANRAQMLASVPLAMEAAEQAAANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQ
EEKGALGFYLSGHLFDAYRDEVRRFVRQKIGDLKEGRDKLVAGIIASLRTQMTQRGKMLI
ALLDDGSGQCEITIFNEQFEANKALFKEDELLIVQGQARNDAFTGGLRFTADTVMDLERA
RSRYAQAVRLTMNGNADAAALRRVLEPHVSKDDSAAAPAFEAPVPRGGGRDGGRRPQAPL
PNGLAVQVHYSNARAQGEMRLGDAWRVKPSDTLLAELRATFDGSVVEITY
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttgggcagcctgcgcgacgacgcggctacaataacgcccatgtcagatccccgcttcgtc
catcttcgcgttcactccgaattctcgattgccgacggcatcgtgcgtctcgacgacatc
gtcaaggcggcggccgcggacggccagggcgcgctcgccctcaccgatctcggcaacgca
ttcggcctcgtccgtttctaccaggaagcccgcggcaagggcatcaagccgatcgccggc
tgcgacgtctggatcaccaatccggacgatcgcgacaaaccgtcgcgcctgctgctgctg
gtgaaggacaaggtcggctacctgaacctgtgcgagctgctgtcgaaggcatggctcacg
aaccagtaccgcggccgcgcggagctcgacgcgagctggctcgacggcgaactgtcgcaa
gggctgctcgcgctgtcgggcgcgcagcagggcgatatcgggctcgcgttcgcggccggc
aacgaggaagccgcgcgccgtcatgccgagcgctgggcgaaggtgttcccgggcggcttc
tacatcgagctgcagcgttacggccagccgggcgccgaggcgtacatccagcaggccgcg
acgctcgccgcgtcgctcggtctgccggtcgtcgcgacgcatccgacgcagttcatgacc
gacgatgatttcaccgcgcacgaagcgcgcgtgtgcatctcggaaggcgacatgctcgcg
aatccgcggcgccagaaacgcttcacgaccgatcagtacttccgcacgcaggacgagatg
gtcgcgctgttcgccgatcttccctcggcggtcgcgaacacggtcgagatcgcgaagcgc
tgcaacctgaagctcgagctcggcaagccgaagctgccgctgttcccgacgccggacggc
atgtcgctcgacgactacctggtccaactgtcgaaggaagggctcgagaagcgcctcgaa
cagctgtttccggatacggccgagcgtgacgcgcagcgcgacacgtactacaagcggctc
gaattcgagtgcgggaccatcacgaagatgggcttcccgggctacttcctgatcgttgcc
gacttcatcaactgggcgaagaacaacggcgtgccggtcggcccgggccgcggctcgggc
gccggctcgctggtcgcgtacgcgctcggcatcaccgatctggatccgctgcgctacaac
ctgctgttcgagcgattcctgaatccggaacgcgtgtcgatgcccgacttcgacatcgac
ttctgccagcacggccgcgatcgcgtgatccagtacgtgaaggaaaaatatggcgcggac
gccgtgtcgcagatcgccaccttcggcacgatggccgcgaaggcggccgtgcgcgacatc
ggccgcgtgctcgatctcggctacatgttcaccgacggcgtcgcgaagctgatcccgttc
aagccgggcaagcacgtgacgatcgccgacgcgatgaaggaagagccgcaactgcaggag
cgctacgaccacgaggacgaagtgcaccagctgctcgacctcgcgcagcgcgtcgagggc
ctgacgcgtaacgtcgggatgcacgcgggcggcgtgctgatcgcgcccggcaagctgacc
gatttctgcccgctgtacacgcagggcgacgacggcggcgtcgtcagccagtacgacaag
gacgacgtcgaagccgtcggcctcgtgaagttcgactttctgggtctcacgacgctgacg
atcctcgactgggccgagcgctacatccgccgcctcgatgcgtcgaaggccgactggtcg
ctcgcgcaggtgccgctcgacgatcctgcatcgttccagatcctgaagaaggccaacacg
gtcgccgtgttccagctggaaagccgcgggatgcagggcatgctgaaggacgcgcagccc
gaccgcttcgaggacatcatcgcgctcgtgtcgttgtaccgtccgggcccgatggacctg
atcccgagcttttgcgcacgtaagcacggccgcgagaaggtcgagtatccggatccgcgc
gtcgaacccgtcctgaaagagacctacggcatcatggtctatcaggagcaggtgatgcag
atggcgcagatcatcggcggctattcgctcggcggcgccgacttgctgcgtcgcgcgatg
ggcaagaagaagcccgaggagatggtcaagcaccgcgagatcttcgccgagggtgcggcg
aagaacggcctcacgcgcgagaagtccgacgagatcttcgacttgatggagaagttcgcg
ggctacggcttcaacaagtcgcacgcggcggcctatgcattgctcgcgtattacaccgcg
tggctgaaggcgcaccatccggccgaattcatggcggccaacatgacgctcgcgatggac
gacaccgacaaggtgaagatcctgttcgacgattgcgtcgtgaacaacctcgtcgtgctg
ccgccggacatcaaccagtcgcattaccgcttcgagccggtcggcgaagccgacggcaag
cgctcgcgcacgatccgctacggcctgggcgcggtgaagggcagcggccagaacgcgatc
gaggaaatcctgcgcgcgcgcgaggaaaagccgttcaccgacctgttcgacttctgcgag
cggatcgaccggcgcgtcgtcaatcgccgcacggtcgaggcgctgatccgcgccggcgca
ttcgattcgctgaacgcgaaccgcgcgcagatgctcgcgtcggtgccgctcgcgatggaa
gcggccgagcaggccgcggcgaacgcgatgcaggccggcctgttcgacatgggcgccgag
tcgccgcacgcgcatgcgctcgtcgacgagcccgcgtgggacgacaagcgccgcctgcag
gaagagaagggcgcgctcggcttctacctgtccggtcacctgttcgacgcgtatcgcgac
gaagtgcgccggttcgtgaggcagaagatcggcgatctgaaggaggggcgcgacaagctc
gtcgcgggcatcatcgcgtcgctgcgcacgcagatgacccagcgcggcaagatgctgatc
gcgttgctcgacgacggttcgggccagtgcgagatcacgatcttcaacgagcagttcgag
gcgaacaaggcgctgttcaaggaagacgaactgctgatcgtgcaggggcaggcgcgcaac
gacgcgttcaccggcggtctgcgcttcacggccgatacggtgatggacctcgagcgtgcg
cgcagccgctacgcgcaggcggtgcggctcacgatgaacggtaatgcggatgcggcggcg
ctgcgccgcgtgctcgaaccgcacgtgtcgaaggacgattcggcggccgcccccgcgttc
gaggcgcctgtgccgcgtggcggcgggcgtgacggcggccgtcgtccgcaggcaccgttg
ccgaacgggctcgcggtgcaggtgcactacagcaacgcgcgcgcgcagggcgaaatgcgt
cttggcgacgcgtggcgcgtgaagccgagcgacacgctgctcgcggagctgcgcgcgacg
ttcgacggcagcgtcgtcgaaatcacgtactga
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integrated database retrieval system
