Burkholderia ambifaria MC40-6: BamMC406_2595
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Entry
BamMC406_2595 CDS
T00684
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BamMC406_2595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bac03019
]
BamMC406_2595
Enzymes [BR:
bac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BamMC406_2595
Messenger RNA biogenesis [BR:
bac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BamMC406_2595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
Sacchrp_dh_NADP
CMS1
Cas3-like_C_2
DegT_DnrJ_EryC1
CARD_2
Motif
Other DBs
NCBI-ProteinID:
ACB65072
UniProt:
B1YW11
LinkDB
All DBs
Position
1:2881941..2883380
Genome browser
AA seq
479 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPSAKPEPIQQRRGQQPRGGNAGGGGNRQPRAGGSGQPAAK
REGNAQPKAAKAAKPRTAGGAGGNAGGGRPSGGTGARPASGNAAHPNRNRPSRSGQRGH
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcttggccgaaccgctggtcaaggcggtcaatgagctcggc
tacacatcgccgacccccatccagcagcaggccatccccgccgtcctcggcggcggcgac
ctgctcgccggcgcacagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgcctgcacacgtactacgccgagcatcgcggtgcgaagcgcgcggtgcgtgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgtctgctcgaccac
atgcagcagaagacgatcgatctgtcgaacctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctggcgaagctgccgccg
cagcgccagaacctgctgttctcggccaccttctccgacgagatcaagtcgctcgccgac
agcctgctcgattcgccggcgctgatcgaagtcgcgcgccgcaacaccaccgcggaaagc
gtcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgagctgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgaacagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agtcagtcggcccgcacgcgcgcgctcgcggagttcaagagcagcacgctgcaggtgctg
gtcgcgaccgacatcgccgcacgcggcatcgacatcgatcagctgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagattacgtgcaccggatcggccgcacgggccgtgca
ggcgcgaccggtgaagccgtgtcgctcgtgtgcgtcgacgagaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgagcgcgaagccggaaccgatccagcagcgccgcgggcagcagccgcgtggcggcaat
gccggcggcggcggcaatcgccagccgcgtgcaggcggctcaggccagccggccgcgaag
cgcgaaggaaatgcgcagccgaaggccgcgaaggcagccaagccgcgcacggccggcggc
gcgggcggcaatgccggcggcggccgtccgtccggcggcaccggtgcacgcccggcgagc
ggcaacgccgcgcatccgaaccgcaaccgtccgtcgcgcagcggccagcgcggtcactga
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