Burkholderia ambifaria MC40-6: BamMC406_2716
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Entry
BamMC406_2716 CDS
T00684
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BamMC406_2716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bac03400
]
BamMC406_2716
Enzymes [BR:
bac01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BamMC406_2716
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BamMC406_2716
DNA repair and recombination proteins [BR:
bac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BamMC406_2716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
RNHCP
Motif
Other DBs
NCBI-ProteinID:
ACB65193
UniProt:
B1YN48
LinkDB
All DBs
Position
1:complement(3014194..3015021)
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AA seq
275 aa
AA seq
DB search
MPELPEVEVTRRGIEPFVAGRRVERVDVRTAMLRWPVPAGLAEQLRAREVLAVERRGKYL
LFEVDAGWFIVHLGMTGTLRVLPAAGVPVAAKHDHIDWIFDEFVLRFRDPRRFGAVLWHA
REAGDVHAHPLLASLGVEPFSPAFTGALLHARTRGRTVSVKQALLAGDMVVGVGNIYASE
SLFRAGIRPTTAAGKVSLPRYERLADAVRATLADAIERGGSTLRDFVGSNGESGYFQLDC
FVYDRAGLPCRVCGTPIRQIVQGQRSTYFCPTCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttgccagaagtcgaagtcacgcgccggggcatcgagccctttgtcgcgggc
cgccgcgtcgagcgtgtcgacgtccgtaccgcgatgctgcgctggcccgtgccggcgggg
ctcgcggagcaattgcgcgcgcgcgaggtgctcgccgtcgagcgtcgcggcaagtacctg
ctgttcgaggtcgacgcgggctggttcatcgtgcatctcggcatgacgggcacgctgcgc
gtgctgcccgcggccggcgtgccggtcgccgctaaacacgaccacatcgactggatcttc
gacgagttcgtgctgcgctttcgcgatccgcgccgcttcggcgccgtgctgtggcacgcg
cgcgaagcgggcgacgtgcatgcgcatccgctgctcgcgagcctcggcgtcgagccgttc
tcgccggcgttcaccggcgcgctgctgcacgcgcgcacgcgcgggcgcacggtgtcggtc
aagcaggcgctgctcgcgggcgacatggtcgtcggcgtcggcaacatctatgcgtcggag
agcctgtttcgcgccggcatccggccgacgaccgccgccggcaaggtatcgctgccgcgc
tacgagcgactggccgacgcggtgcgcgcgacgctcgccgacgcgatcgagcgcggcggc
agcacgttgcgcgactttgtcggcagcaacggcgaaagcggctatttccagctcgactgc
ttcgtctacgaccgtgcggggctgccttgccgcgtatgcggcacgccgatccgccagatc
gtgcagggccagcgctcgacctatttctgcccgacctgccagcgttga
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