Burkholderia ambifaria MC40-6: BamMC406_3587
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Entry
BamMC406_3587 CDS
T00684
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bac
Burkholderia ambifaria MC40-6
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bac03016
]
BamMC406_3587
Enzymes [BR:
bac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BamMC406_3587
Transfer RNA biogenesis [BR:
bac03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BamMC406_3587
Prokaryotic type
tRNA splicing ligases
BamMC406_3587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ACB66054
UniProt:
B1Z0D3
LinkDB
All DBs
Position
2:complement(523316..524551)
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AA seq
411 aa
AA seq
DB search
MVMQMSNDDFQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQMPFIFRHVAVMPDVHLG
KGSTIGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTAADLPDSLGALRSEIERAVPHGRA
PGRRDPGAWGDRTPAAVTESWKSLLPGFKRIIDKYPKLEKTNHYAHLGTLGTGNHFIEVC
IDEADHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPDRNLAYFTEGSRHFDDYV
EAVGWAQDYARRNRQAMMDAVIGAARSVIAKPFSVDEHAVNCHHNYVQRERHFGEDVLVT
RKGAVSAQKGQLGIIPGSMGAKSFIVRGLGNPESFCSCSHGAGRTMSRTEAKRRFTVDDQ
VNATRGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTLRQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgcaaatgagtaacgacgattttcaggtaatggaactggcgaacggcaagccg
gtgaagatgtggacgcaaggtgtcgctgtcgaggacgaagcgcgcgcgcagctgcgcaac
accgcgcagatgccgttcatcttcaggcacgtcgcggtgatgccggacgtccacctcggc
aagggctcgacgatcggcagcgtgatcccgacgaagggcgcgatcattccggcagcggtc
ggcgtcgacatcggctgcgggatgatggccgcacgcacgacgctcaccgccgctgacctg
ccggactcgctcggcgcgctgcgcagcgagatcgaacgcgcggtgccgcacggccgcgca
ccgggccgtcgagatccgggcgcatggggcgaccgcacgccggccgccgtgaccgaatcg
tggaagtcgctgctgccgggtttcaagcgcatcatcgacaagtatccgaagctggagaag
acgaaccactacgcgcatctcggcacgctcggcacgggcaaccacttcatcgaggtgtgc
atcgacgaagcggaccacgtgtggttcatgctgcacagcggctcgcgtggcgtcggcaat
gcgatcggcagcctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaac
ctgcccgatcgcaacctcgcgtatttcaccgagggcagccggcacttcgacgattacgtc
gaagcggtcggctgggcgcaggactacgcgcggcgcaaccggcaggccatgatggatgcg
gtgatcggcgcggcgcgcagcgtgatcgcgaagccgttctcggtcgacgagcacgcggtg
aactgccaccacaactacgtgcagcgcgaacgccacttcggcgaggacgtgctcgtgacg
cgcaagggtgcggtgtccgcgcagaaggggcagctcgggatcatcccgggctcgatgggt
gcgaagagcttcatcgtgcgcgggctcggcaatccggaaagcttctgctcgtgcagccac
ggcgcgggccggacgatgagccgtaccgaagcaaagcgccgcttcacggtcgacgatcag
gtgaacgcgacgcgcggcgtcgaatgccggaaagacgcgggtgtcgtcgacgaaattccg
atggcctacaaggacatcgatgcggtgatggcggcccagcgcagcctcgtcgaagtggtg
catacgctgcggcaggtggtgtgcgtgaaaggatag
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