Burkholderia ambifaria MC40-6: BamMC406_5892
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Entry
BamMC406_5892 CDS
T00684
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD family
KO
K03086
RNA polymerase primary sigma factor
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BamMC406_5892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bac03021
]
BamMC406_5892
Transcription machinery [BR:
bac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BamMC406_5892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_ner
Sigma70_r4_2
HTH_25
Motif
Other DBs
NCBI-ProteinID:
ACB68329
UniProt:
B1Z3L6
LinkDB
All DBs
Position
3:complement(428865..430730)
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AA seq
621 aa
AA seq
DB search
MPARHAAVPTAGRDDGAAPYAVAHLHALIATGLSRGFVTHGDIIDGLPDDDANDSGIDAV
AAVLDELGIAVCDSADTASGWTLERYFRPAPPARAWADGAGTLAAADLLAPRTTDPVRLY
LREMGTTPLLTRDEEFAYARRIERGRAASAAVLCGDPDALDALVSIRVEIAQCRTAASTY
VIFLDDGPRDDMTVDHAEVRTSATPAGEPARDDDTEADTQTEDSAWRGAVVARLARIDEL
AHGMRAALASGGSACAAYRSHVRDAAALLRTLGLSARALERMSEPLRARARRHRALRARL
ERMLADVGVPRSFAHAADDDHAGWLASCIAAHPACAPTLKRRAAEFIDARDAIVRAAPAS
ELPPGATASLDARLGAIERAMQPARTGLFDANLRLVVSIAKRYPDRGLPFADLIQEGNIG
LLKAIERYDYRRGFRFSTYATWWIRQAITHALADLGRTIRVPTHTVDALNKLSRLAREHR
QRAGTAATPAELAVHMGEPVDKVRDLMAIVKEPVSADVPVSPEGDMTFADVAPDTTTPSP
EDAAGATQLRRTIAAVIDRLPPREAMVLKLRYGLHTDEGCSLRDIGRQLNLSAERVRQIE
ASALARLRASDTLGLLRSFIA
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgccggcgcggcacgcggcggtgcccacggccggccgcgacgacggcgcagcgccgtac
gccgtcgcgcacctccacgcgctgatcgcgaccggcctgtcgcgcggcttcgtcacgcac
ggcgacatcatcgacgggctgcccgacgatgatgcgaatgacagcggcatcgatgcggtg
gcagcggtgctcgacgaactcggcatcgcggtgtgcgacagcgccgataccgcgagcggc
tggacgctcgagcgctacttccggcccgcgccgcccgcgcgcgcatgggccgacggcgcc
ggcacgctcgccgcggccgacctgctcgcgccgcgcacgaccgatccggtccggctgtac
ctgcgcgagatgggcacgacgccgcttctcacgcgcgacgaggaattcgcgtacgcgcga
cggatcgagcgcggccgcgccgcgtcggccgcggtgctgtgcggcgaccccgatgcactc
gacgcgctcgtgtcgattcgcgtcgagatcgcgcaatgccggaccgccgcgtcgacctat
gtgatctttctcgacgacggcccgcgcgacgacatgacggtcgatcacgccgaggtgcgc
acgtcggccacccctgccggcgaacccgcgcgcgacgacgatacggaggccgatacgcag
accgaggattcggcctggcgcggcgcggtagtggcgcggctcgcacgcatcgatgaactc
gcgcacggcatgcgcgccgcgctggcgtccggcggcagcgcttgcgccgcgtatcgctcg
cacgtacgtgacgccgctgcactgctccgcacattgggcctgtccgcccgcgcgctcgaa
cggatgagcgagccgttgcgcgcccgcgcgcgccggcaccgtgcgttgcgggcccggctg
gagcggatgctggccgacgtcggcgtcccgcggtcgttcgcgcacgcggccgacgacgat
cacgccggctggctggcatcatgcatcgccgcgcacccggcctgcgcgccgacgctgaaa
agacgggcggccgagttcatcgatgcacgcgacgcgatcgtgcgcgcggcccccgcatcg
gaactgccgcccggcgcgaccgcgtcgctcgatgcacggctcggcgcgatcgaacgcgcg
atgcagccggcgaggacgggtttgttcgatgcgaacctgcggctcgtcgtgtcgatcgcg
aagcgctatccggatcgcggcctgccgttcgccgacctgatccaggaaggcaatatcgga
ctgttgaaggccatcgagcgctacgactaccggcgcggcttccggttctcgacttacgcg
acctggtggatccggcaggcgatcacgcatgcgctcgccgacctcggccgcacgatccgc
gtgccgacgcatacggtcgacgcgctgaacaagctgtcgcgactcgcgcgcgagcatcgg
cagcgcgcgggcaccgcggcgacgccggccgaactggccgtccacatgggcgagccggtc
gacaaggtgcgtgacctgatggccatcgtgaaggaaccggtgtcggccgacgtgccggtc
tcgccggaaggcgacatgacgttcgccgacgtcgcgccggacacgacgacgccttctccc
gaagacgcggccggcgccacgcagttgcgccgcacgatcgctgcggtgatcgatcggctg
ccgccgcgcgaggcgatggtcctcaagctgcgctacggtttgcacacggacgaaggctgc
tcgctgcgcgacattggccgccagctgaacctgtccgccgaacgcgtgcggcagatcgag
gcctcggcgctcgcccgccttcgcgcgtccgacacgctcggtctgctccggtcgttcatc
gcgtag
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