Burkholderia ambifaria MC40-6: BamMC406_6346
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Entry
BamMC406_6346 CDS
T00684
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
bac
Burkholderia ambifaria MC40-6
Pathway
bac02020
Two-component system
bac02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bac00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BamMC406_6346
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BamMC406_6346
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bac03021
]
BamMC406_6346
Transcription machinery [BR:
bac03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BamMC406_6346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ACB68778
UniProt:
B1Z4W5
LinkDB
All DBs
Position
3:complement(949942..951381)
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AA seq
479 aa
AA seq
DB search
MSVTLALQMRQHLALTPRLQQSLRLLQLSSLEFQQELRQALDSNPFLEDGQADDEAVAEA
DAPDHPAEAAAPEPVPDGDDVRPPDGDVSYTAAPAPRTTGRQGDDVSDLSPGEWMAAEPS
LHQQLHDALRLYPLNRRDREAARIVIDALDEDGYLRQELSELLVAADPALLLSEQDLAVA
LRLVQMLDRPGIAARSLSECLLLQLDAIPAGTPALAEAKVIAREHLERLARRETAEIQRR
VGCSQATMQAACALVRGLDPRPGNHYGSTRGDYVVPDVIVRQVRDEWIVTINPAVLPRAR
LHERYATLFAQSSGERDSPLGQQLQEARWLIRNVQKRFDTIQRVGECIVARQRDFFRYGE
IAMKPLVLRDIAEELDLHESTVSRATGNKYMATPHGTFEFKHFFPRKLEAAGKGVCSASA
AKVLIRDMIAAERHTDPLSDVALAQNLAGRGILLARRTVTKYRQAMKIPPAELRRRDAA
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcacgcttgcgctccagatgcgacagcatctggcactcacaccgaggctgcag
caatcgctgcgtctgctgcagctgtcttcgctcgaattccagcaggaattgcggcaggcg
ctcgactcgaatccgtttctcgaagatggccaggccgacgacgaagccgtcgccgaggcc
gacgcgcccgaccatccggccgaggccgccgcgcccgagcccgtgcccgatggcgacgac
gtgcgcccgccggacggcgacgtgtcatacacggccgcgccggcgccgcgcaccacgggc
cggcagggcgacgacgtcagcgacctgtcgcccggcgaatggatggcggccgagccgtcg
ctgcaccagcaactgcacgacgcgctgcgtctctatccgctgaaccggcgcgaccgcgag
gccgcgcgcatcgtgatcgacgcgctcgacgaggacggctacctgcgtcaggagctgtcc
gagctgctggtcgcggccgatcccgcgctgctgctgtcggaacaggatctcgcggtcgcg
ctgcggctcgtgcagatgctcgatcgcccagggatcgccgcacggtcgctttctgaatgc
ctgctgctgcagctcgacgcgattcccgccggcacgccggcgctcgcggaagcgaaggtg
atcgcgcgcgaacatctcgaacggctcgcgcggcgggagaccgccgagatccagcggcgc
gtcggctgcagccaggcgacgatgcaggccgcgtgcgcactggtgcgcgggctcgatccg
cgccccggcaatcactacggcagcacgcgcggcgactatgtggtgcccgacgtgatcgtg
cgccaggtgcgcgacgaatggatcgtgacgatcaacccggccgtgctgccgcgcgcgcga
ttgcacgaacgctatgcgacgttgttcgcgcagtcgagcggcgagcgcgattcgccgctc
ggccagcagttgcaggaggcgcgctggctgatccgcaacgtgcagaagcgcttcgacacg
atccagcgcgtcggcgaatgcatcgtcgcgcggcagcgcgacttcttccgttacggcgag
attgcgatgaagccgctcgtgctgcgcgatatcgcggaagagctcgacctgcacgaatcg
accgtgtcgcgtgcgacgggcaacaagtacatggccacgccgcacggcacgttcgagttc
aagcacttcttcccgcgcaagctggaggcggccggcaagggcgtgtgctcggcatcggcc
gcgaaggtgctgatccgcgacatgatcgcggccgagcgccataccgacccgctgtccgat
gtcgcgctcgcgcagaacctcgcggggcgcggcatccttcttgcgcgtcgtacggtgacc
aagtatcgccaggccatgaagatcccgccggccgaattgcgtcggcgcgacgccgcctga
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