Bacillus sp. S3: FAY30_00315
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Entry
FAY30_00315 CDS
T08283
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
baca
Bacillus sp. S3
Pathway
baca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FAY30_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baca03400
]
FAY30_00315 (mfd)
Enzymes [BR:
baca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FAY30_00315 (mfd)
DNA repair and recombination proteins [BR:
baca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FAY30_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
IstB_IS21
AAA_22
DUF3074
Motif
Other DBs
NCBI-ProteinID:
QCJ40489
LinkDB
All DBs
Position
60153..63689
Genome browser
AA seq
1178 aa
AA seq
DB search
MNGLKSLFLQQEDIHSVMAGVEGGLKEQLIAGLSGSSRTVLTASMYEQMQRPIMLVTHNL
LQAQKLYDDLVNLVSEKEVFLFPANELIAAELSIASPELKAQRIEALNHWSQLSKGILIV
PIAGLKKIIPPKSEWSQYQLRLTLGQDIDIEKLLLTLVHMGYVRAEMVTTPGEFSVRGGI
IDIYPLTEADPLRIELFDTEIDSIRYFSLDDQRSKGKIKEILIGPATEILLEAEDYRRMV
GRLEEGLAQSLRKLKDDKAKMQLSQNISHELEQLKNGQKPDQVYKYLSLAYERPASLLDY
LPRNGLVLIDEISRVQEMNDSLVKEEAEWYTSLLAEGQIIHDLHISHDLQALLQKREFPV
LYMSLFLRHVANTSPQNIINISCKQMQNFHGQMHLLKAEIDRWKKANYSIVFLGQDEERV
KKLERVLEDYEIDSSLIKGDSHLLPGKVQIMKGNLQSGFELSIQKIAVITEEELFNKRVK
KSKSRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLVINGVHKDYLNIRYQGTD
KLYVPVEQIDLVQKYVGSEGKEPKVYKLGGSDWKKVKKKVESSVQDIADDLIKLYAEREA
AVGYGFSPDGDMQREFESSFAYQETDDQLRSIHEIKKDMERLRPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAFLVPTTILAQQHHETLRERFQDYPINIGLLSRFRSKKQQTETIK
GLKAGTVDIVVGTHRLLSKDIVYRDLGLLIIDEEQRFGVTHKEKIKKLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGSLVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTYAHGQMTENELESVMISFLAGEFDVLVSTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGALGAEVKKS
VEIDLEIDAYIPDTYIKDGHQKIEMYKRFRGLETLEDVEELQEEMRDRFGEYPDEVAYLF
QIAEIKVYALLNGVDQIKQVKQEVTILISEQITATLDGAKLFALSSPFGRNVNPGMEGSR
LKIVIKTKEFGTAEWLHIVSELVKGIPLAKRGQENPVK
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgaatggtttaaagtcattattccttcagcaggaagatatccactcggttatggctggt
gtggagggaggattgaaggagcagctgattgccggcttatcagggtcgtcaaggaccgta
cttactgcatctatgtatgaacagatgcagcggccaatcatgctcgtcacccataatcta
ttacaggcacagaaactctatgatgatcttgtcaatctagtaagtgagaaggaagtcttt
cttttcccggctaatgagttaattgccgctgagctgagcattgccagtcccgaattaaaa
gcacaaagaattgaggccttaaaccactggagtcagttaagtaagggaatcttgattgtc
ccgattgccggtttaaagaaaatcattccgccaaagtcggagtggagccaataccaattg
cggctaaccttagggcaagatattgatatagaaaaactgttacttacacttgtccacatg
ggctatgtacgtgccgaaatggttacgactccaggggaattcagtgtacgaggcgggatt
attgatatttatcctcttacagaggcggatccgctgcgaattgaattatttgacacagaa
attgactccattcgttatttttctcttgatgatcagcgctccaaagggaagatcaaggag
attttgatagggccggcaaccgaaatcctgctggaagctgaggattatcgccggatggtt
ggcagacttgaagagggattagcacaaagtctgagaaaactaaaagatgacaaagcaaaa
atgcagttgagtcaaaatatcagccatgaactggagcaattaaaaaatggccaaaaaccc
gatcaggtttacaagtacctatccctagcatacgaaaggcctgctagtttactagactat
cttcctcgtaatggacttgtgttgattgatgaaatcagcagggtccaagaaatgaatgat
tcccttgtgaaagaggaagcggaatggtatacgagtttactggctgagggccaaatcatc
cacgatttacatatttcgcatgatttacaagccttgctgcagaagagggaattcccagtt
ctgtatatgtccttatttttgcggcatgtggccaatacaagcccgcaaaatatcattaat
atctcttgtaagcaaatgcaaaacttccacggacaaatgcatttgttaaaggcggaaatt
gatagatggaaaaaggcgaattattcaattgtctttttaggacaggatgaggaacgggta
aagaagttggagcgtgtgcttgaggactatgaaatcgatagcagcctcataaagggtgat
agtcaccttttaccgggtaaagttcagattatgaaaggaaacctgcaatcaggttttgaa
ctgtccatccagaaaatcgctgtcattacggaggaagagttatttaataaacgggtgaaa
aagtcgaaaagccggcaaaagctttccaatgccgagcgaattaagagttattctgagctg
aaaattggtgattatgtcgttcacgtcaatcatgggattggtaaatatctagggattgaa
acactggtgattaatggtgtccacaaagattacctgaatatccgctaccagggaacagat
aaactgtatgttcctgttgaacaaattgatcttgtccagaaatatgttggttctgaaggg
aaagagccaaaggtatataaactgggcggcagcgattggaagaaggtaaagaaaaaggtt
gagtcctccgttcaggatattgctgatgatttaattaagctatatgcggaacgtgaagca
gccgttggctatggcttttcacccgatggtgatatgcagcgggaatttgaatcatcattc
gcttatcaggaaacagacgaccagctgcgttccattcatgaaattaaaaaggatatggaa
agattacgcccaatggaccgtctcttgtgcggcgatgtggggtatggaaaaacggaagtt
gcgattcgcgctgccttcaaggcgattgccgacggaaagcaggtggcctttcttgtgccg
acaacgattttggcgcagcagcatcatgaaactttaagggagcgctttcaggattatccg
attaatattggacttttaagccgtttccgttcgaagaagcagcaaacggaaacgattaaa
ggcttaaaggcagggacggttgacattgtggtgggaacccaccgtttgctttcaaaagat
attgtttatcgtgatttagggctgttaattatcgatgaagagcagcgattcggagttacc
cataaagaaaagattaagaagttaaaaacgaatgtggatgtgttaaccttgacagcaacg
ccgattccaaggactctccatatgtcgatgcttggtgtccgcgacttatcggtcatcgaa
acaccaccggaaaatcgtttccctgtccaaacctatgtcatggaatataatggatcgctt
gtacgggaggcaattgaacgggagcttgcgcgcgacggacaagtttactttttatataat
cgggtagaagatattgaacggaaagcagaggaaatttccatgcttgttccggatgcccgg
gttacctatgcccacgggcagatgacagaaaatgaattggaatccgtgatgatcagcttc
cttgcaggcgagtttgatgtgcttgtcagtacaacaatcattgaaactggcgttgatatt
ccaaatgtgaatacgttaattgtctttgatgccgatcgaatgggactttcccagctttat
caattgcgcggccgtgttggccgttccaatcgggttgcctacgcctatttcacttaccgt
aaggataaagtcctgacggaagtagcagaaaaacgtcttcaagccattaaagagtttacc
gagttaggttccggatttaaaattgccatgcgggatttatcaattcgcggtgccgggaat
ttattaggtgctcagcagcatggtttcattgactccgtcggtttcgacctttattcacaa
atgctgaaagaggcaattgaggaacggagaggagcgctcggagctgaagtaaagaaatca
gtggagattgacctcgaaatcgatgcctacattccggatacgtacattaaggatggtcat
caaaagattgaaatgtataagcggtttaggggtctcgagacacttgaggatgtggaagag
cttcaagaagagatgcgtgaccggtttggggaatatccggatgaagtggcctacttgttc
caaattgctgaaataaaggtgtatgctctattaaatggtgtggatcaaattaaacaagtc
aaacaagaagtgacgattttgataagtgagcagatcactgccacgcttgatggagcgaaa
ctatttgctcttagcagcccgtttggccggaatgtcaatccgggtatggaaggatcaagg
ttaaaaatcgtaattaaaacgaaagagtttggaaccgcagagtggcttcatattgtcagc
gaattggttaaaggtattccattagctaaacggggacaggaaaatcccgttaaataa
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integrated database retrieval system
