Bacillus sp. S3: FAY30_09320
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Entry
FAY30_09320 CDS
T08283
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
baca
Bacillus sp. S3
Pathway
baca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY30_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baca03019
]
FAY30_09320
Messenger RNA biogenesis [BR:
baca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAY30_09320
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Mur_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QCJ42086
LinkDB
All DBs
Position
1936970..1938637
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AA seq
555 aa
AA seq
DB search
MIQKKNTSIKIIALGGIGEIGKNMYLVEVDKDIFIVDAGLMFPEEEMLGIDMVIPDLTYL
NDNKERVKAIFLTHGHEDHIGALSYVLRKVNVPVYGTKLTLALAKAKLKEQEFIGNAEFI
EIDSDTKVELDAVHVSFFRTNHSIPDSVGVCIHTSEGIIVYTGDFKFDQAATKLYKPEIG
KMAEIGEQGVLCLLSDSTEAEKPGYTTSEAIVEREMSHAFYNAPGRIIAACFASDINRIQ
HIFNAAKENGRKVAVVGKSLERIYHIALDLGYLEVDEDVMIQVNQINEYPDQEIAVLMTG
GQGEPIEALQKMAKQTHKLLNIQPGDTVLIAASPLRGSEVFLGKTVDLLFKAGANVVYGK
RTIHVSSHGSQEELKFMINLMKPKFLIPVHGEYRMLKAHRKVAIECGLADEQIYIPDRGD
IVEWKEGTLTVTGKVPSGNVLIDGIGVGDVGNIVLRDRRLLSQDGILIVVVTLTKQEKKI
AAGPEIISRGFVYVRESEKLMDDSTKLVHDIVERNTAKTSFEWSTLKQEIRDELNRSLFE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgatacagaaaaaaaatacttccatcaagattattgcacttggtggtatcggagaaatc
ggaaagaatatgtaccttgttgaagtggacaaggacatatttattgttgatgccggctta
atgttccccgaggaagaaatgcttggtatcgatatggtcattccagatctaacatattta
aatgacaataaggaacgagtcaaagcgatttttttaacacatggacatgaagaccatatt
ggtgctctttcctacgtgcttcgaaaggttaatgtacccgtatatggaacgaaactaaca
cttgctcttgcaaaagccaagcttaaggaacaggaatttatcggaaatgcagaatttatt
gagattgattcggatacaaaagtggaattagatgctgtacatgtaagtttttttagaact
aatcatagcatcccggattcagttggcgtttgtatccatacatctgaagggattattgtt
tatacgggagactttaaatttgatcaggctgcaacgaaactttataagcctgaaattgga
aaaatggctgagataggggaacagggggttttgtgcttactgtctgacagtactgaagcc
gaaaaacctgggtacacaacatctgaagcgattgttgaacgtgaaatgtcccatgcgttt
tataatgcaccggggaggattattgccgcttgctttgcatcggacatcaatcgaatccag
catatttttaatgctgcgaaagaaaatggccgtaaagtcgctgtagtaggaaaaagcctt
gaaagaatctatcatattgccctcgacttaggatatttagaagtggacgaagatgtcatg
attcaggtaaatcagattaatgaatatcctgaccaagaaatagcggtattaatgaccggt
ggccagggagaaccaattgaagccttgcagaaaatggcaaaacagacacataagctattg
aatatccagcctggtgatactgttttaattgctgcttcaccattaagaggaagtgaagta
tttttagggaaaacggtcgatctgttattcaaagcaggagcaaatgttgtatatggaaaa
aggacaatccatgtatcaagccatggaagtcaagaagaattaaagtttatgattaattta
atgaagccgaaatttttgattccggttcacggtgagtatcggatgctgaaggcacacaga
aaagtggccattgaatgcggtcttgccgatgaacaaatttacattcccgaccgcggtgat
attgtggaatggaaggaagggacattaacagttaccgggaaggttccgtctggcaatgtg
ctaatcgatggaatcggtgtaggcgatgtcggaaatatcgtccttcgggatcgaaggctt
ttgtcacaagatggcattttaattgttgttgtcacgttaacgaaacaagaaaagaaaatt
gcggcagggccggaaatcatttcacgagggtttgtctatgttcgcgaatcggagaaatta
atggatgattcaacgaaattagttcatgatattgtggaaagaaacacagctaaaacctca
tttgaatggtccactcttaagcaggaaataagagatgaattaaatcgatctttatttgaa
aaaacaaaaagaaggccaatgatactgccgattattatggaagtgtga
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