Bacillus sp. S3: FAY30_20220
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Entry
FAY30_20220 CDS
T08283
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
baca
Bacillus sp. S3
Pathway
baca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAY30_20220 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baca03019
]
FAY30_20220 (rnr)
03016 Transfer RNA biogenesis [BR:
baca03016
]
FAY30_20220 (rnr)
Enzymes [BR:
baca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAY30_20220 (rnr)
Messenger RNA biogenesis [BR:
baca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FAY30_20220 (rnr)
Transfer RNA biogenesis [BR:
baca03016
]
Prokaryotic type
tRNA degradation factors
FAY30_20220 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_RNR_1st
OB_Dis3
Rep3_N
MarR_2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QCJ44044
LinkDB
All DBs
Position
complement(4138021..4140387)
Genome browser
AA seq
788 aa
AA seq
DB search
MEDNIQKHIDRLLQYMRDEAYKPLTVQELEEAFGIQDSSDFKEFVKALVQMEEKGLVVRT
RSNRYGLPQKMNLIRGKLIGHAKGFAFVVPDEPGMDDIFIPPNETNTAMHGDTVLARISS
ETSGQRREGTIVRIIERGVQQVVGTYVESKSFGFVIPDDKKFASDIFIPKAASKGAVEGH
KVVVKLVTYPEGRKSAEGEVITILGHKNDPGVDILSVIHKHGLPMAFPDEVLKQANDTPE
TIDESELTNRRDLRNETIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVSYYVKEGT
PIDLEAEQRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLVLSCEMEISDEGAVVSHEI
FQSVIKTTERMTYHDVNLILVEKDEETRGRYEPLVPMFELMEELAAILRNKRMKRGAIDF
DFKESKVLVDEESKPTDVVLRERSVAERLIEEFMLAANETVAEHFHWLDVPFIYRIHEDP
KEDKLRRFFEFITNFGYIVRGTANDVHPRALQEIIEEVQGKPEEMVISTVMLRSMQQAKY
DPESLGHFGLSTEFYTHFTSPIRRYPDTIVHRLIRTYLIEGKLDEATQEKWNARLPEIAQ
HSSKMERRAVDAERETDELKKAEYMEDKIGVEYDGIISSVTNFGMFVELPNTIEGLVHVS
YMTDDYYRFDERHFAMIGERTGNVFRIGDEITVRVVKVNKDERAIDFEIVGMKGTPRRER
SETPKIFKTRSDTDKPRRNKQKGDRDQGRNGSRNQKSDSGDTQGKKPKKKRKFYDNVPKS
KSTKRRNK
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
ttggaagacaacatacaaaagcacattgacaggcttttgcaatatatgagggatgaggcc
tacaagccattgacggttcaggagctggaggaggcatttggcattcaggactccagtgat
ttcaaagagtttgtcaaagcccttgtacaaatggaagaaaagggtctcgtcgttcggacc
cgcagcaatcgttacggtctgccgcaaaaaatgaacttaattcgcggaaagcttatcggc
catgcgaaaggctttgcctttgtggttcctgatgagccggggatggatgatatttttatc
ccgccgaatgaaacaaacaccgcgatgcatggagacaccgtgttagcccgtatttcatca
gaaacctccggacagcgccgcgaaggaaccatcgtccgtatcattgaacgcggtgtacag
caagtcgtcggaacatacgttgaaagcaagagctttggctttgtgattccagatgacaag
aaatttgccagtgatatttttattccaaaagccgcttctaaaggagcagtggagggacat
aaggtggtcgtgaagcttgtcacgtaccctgaagggcgaaagagtgcggaaggagaagtc
ataacgatattggggcataaaaatgacccaggagtggatattctttctgtcatacataag
cacggcctgccaatggccttccctgatgaggtgcttaaacaggcaaatgacacacctgaa
acgattgatgaaagtgaattgaccaatcgccgcgacttgcggaatgaaacgattgtcacc
attgacggggccgatgcgaaggaccttgatgatgcggtaaccgtcacaaagcttgagaac
ggcaactataaacttggcgttcatatcgcagatgtcagttattatgtaaaagaaggaacg
ccaatcgaccttgaagcagagcaacgggcaacaagtgtgtatttagtagaccgagtgatt
ccgatgattcctcatcgcctctcgaacgggatttgttcattgaatccgaaggtggaccgg
cttgttttatcatgtgaaatggaaatttcagatgagggcgccgttgtttcccatgaaatt
tttcaaagtgtcatcaaaacaaccgagcggatgacctaccatgatgtgaatctgattctt
gttgaaaaagatgaggaaacacgcggacgctacgaaccacttgtgccgatgtttgaattg
atggaagaacttgctgccatcctccgcaacaaacggatgaagcgcggcgccatcgacttt
gattttaaagaatcaaaggtgttggtggatgaggaaagcaagccgacagatgttgttctg
cgtgaacggtctgtagcagagcgtttaattgaagaattcatgctcgcggcaaatgaaacg
gttgcggaacattttcactggctcgatgtaccgttcatttaccgtatccatgaggatccg
aaggaagataaattacgaagatttttcgaatttatcacgaactttggttatattgtaaga
gggactgccaatgatgtgcacccaagagcgcttcaggaaattatcgaagaggtgcaagga
aagccagaagagatggtgatttcaaccgtcatgctgcggtcgatgcagcaggcaaaatat
gaccctgaaagtcttggacacttcggcttatctaccgaattctatacccatttcacttcg
ccgattcgccgctatccggatacgatcgtccaccgcttaatccgtacgtatctaattgaa
ggaaagctggatgaagcgacacaggaaaaatggaacgcccgattgccggaaattgcccag
cattcatcaaaaatggagcgccgtgccgttgacgcagaacgggaaacagatgagttgaag
aaagcggaatacatggaagataaaattggcgttgagtatgatggcatcatcagttcggtt
accaactttggaatgtttgtcgagctgccgaataccattgaaggcctagttcacgtcagc
tatatgaccgatgattattaccgttttgatgaacgccactttgcaatgattggcgagcgg
acagggaatgtgttccgaattggtgatgaaatcacggtccgcgtggtaaaagtcaataaa
gatgaacgcgcgattgattttgaaatcgtcggcatgaaaggaacgcctcgcagggaacgt
tcggagacaccgaaaatttttaaaacccgcagcgatactgataagcctcgacgcaataaa
cagaagggtgaccgtgatcaaggccggaatggaagccgtaatcaaaagtctgattccgga
gacactcaaggaaaaaagccgaagaagaaacgtaaattttacgataacgtgcctaaatca
aagagtacgaaacggcgaaataagtag
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integrated database retrieval system
