Bacillus sp. S3: FAY30_20280
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Entry
FAY30_20280 CDS
T08283
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
baca
Bacillus sp. S3
Pathway
baca02020
Two-component system
baca02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
baca00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FAY30_20280 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FAY30_20280 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baca03021
]
FAY30_20280 (rpoN)
Transcription machinery [BR:
baca03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FAY30_20280 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_23
HTH_Tnp_ISL3
HTH_17
HTH_3
Sigma70_r4_2
HTH_IclR
HTH_Crp_2
GerE
MarR_2
HTH_28
HTH_20
HTH_21
HTH_Tnp_Tc3_2
Xre-like-HTH
HTH_38
Herpes_UL92
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
QCJ44056
LinkDB
All DBs
Position
complement(4150882..4152204)
Genome browser
AA seq
440 aa
AA seq
DB search
MNFKAGLWQQQTLKLTMTQELSQAIALLQYSAQELTAFLEDKALENPLMKVETGDVKPMN
PLMDRKRRRHQKEEKDWIEQIADKPFSLEDHLISQLNIANLSAEQLKVIRRLIQSLDENG
YFLGDLSEIAQSLRVEEEVVEDCLAVIQTLEPAGIGARNLQECLLMQLYYENPNNEVALN
ILANYFVLFAEKKWKQIAKEMKITLKDIQDVFDQIQFLNPKPGAMLANETTTYIIPDAIV
EQTEEGLTVRMFDDSLPRISFNENYYKKFKDQDQQVSRFLQDKVQDYQWIARSIEQRRET
LTKVVAKIVEKQTAFFQKGAQYLVPMTMKEVAAELDIHESTVSRAVREKYVQTPVGTFSL
KTFFTSMIQTVSADENTSSTQVKNEISKLIEQENKEKPLSDQEIVEQLKTKAGIVVSRRT
IAKYRDQLGIPSSSKRKRFN
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaaggcaggtttatggcagcagcaaacgttgaaattaacgatgacacaggaa
ttgtcgcaggctattgcattattgcaatattcggcccaggaactgactgcttttttagaa
gataaggcactcgaaaatccccttatgaaggttgaaacgggcgatgttaagccgatgaat
cccctcatggaccgcaaacgccgccggcatcaaaaagaggaaaaggattggatcgaacaa
attgcagacaaacccttttcacttgaagaccatttaatctctcaattaaatattgccaac
ttatcggcagaacaattaaaagtcattcggcgtctgattcagagtcttgatgaaaacggt
tactttctgggtgaccttagtgaaattgctcaaagcctgcgggtggaggaagaagtagtt
gaagattgcttagctgtgatacaaacgcttgaaccggcaggcatcggtgcacggaacctt
caagagtgcctgttgatgcaactgtattatgaaaatccaaataatgaagtggcattaaat
atattagccaactatttcgttctgtttgctgaaaagaaatggaagcaaattgcgaaggaa
atgaaaataactttaaaagatattcaagatgtgtttgaccaaattcaatttctgaatcca
aagccgggtgctatgttagcaaatgaaaccaccacgtatattattccggacgccattgtc
gagcaaaccgaggaaggcctgacagtcaggatgtttgatgattccctgccaaggataagt
ttcaatgagaattattataagaagttcaaagatcaggaccagcaagtcagccgttttttg
caggataaggtccaggattatcaatggattgccagaagtattgaacaacgccgggaaacg
ctcactaaggtggttgccaaaattgttgaaaagcaaacggccttttttcaaaagggtgca
caatatttggtgccaatgacaatgaaggaagtggccgctgaattggatattcatgaatca
acggtaagccgtgcggttcgtgaaaaatatgtccagacaccggtcgggaccttttcatta
aaaacattcttcaccagcatgattcagaccgtttcggcggatgaaaatacatcgtcgacc
caggtgaaaaatgagattagtaaattaatagaacaagaaaataaagaaaagccgttatca
gatcaagaaattgtggaacaattaaaaacgaaggcagggattgtggtttcgaggcgtacg
attgctaaataccgtgatcagctgggaatcccgtcatcttcaaaacgaaaaaggttcaat
taa
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