Bacillus sp. BH072: OY17_03070
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Entry
OY17_03070 CDS
T03582
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bacb
Bacillus sp. BH072
Pathway
bacb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OY17_03070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacb03400
]
OY17_03070
Enzymes [BR:
bacb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OY17_03070
DNA repair and recombination proteins [BR:
bacb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OY17_03070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
CdvA
Motif
Other DBs
NCBI-ProteinID:
AJE77158
UniProt:
A0A806Q5U7
LinkDB
All DBs
Position
610588..614121
Genome browser
AA seq
1177 aa
AA seq
DB search
MDNIQTFIKESDDFKSIVNGLHEGLKEQLLAGLSGSARSVFTSALAQETKRPIFFITHNL
YQAQKVTEDLTALLGDQSVFLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPVVVA
PVAAVRRMLPPKELWKSSQLVISLGDEIEPDQLSARLVEVGYERSDMVSAPGEFSIRGGI
IDIYPLTSEHPVRIELFDTEVDSIRSFNSDDQRSIETLKHVAIGPAKELIIRAEEKARAM
ERLDKGLADSLKKLKQDKQKEMLHINISHDKERLSTGQTDQELVKYLSYFYEKPASLLDY
TPADTLLLLDEVSRIHEMEDQLQKEEAEFTTGLLEEGKILHDIHLSFSFQELMSEKRRPA
IYYSLFLRHVQHTSPQNIVNVTSRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKDRT
DRLASVLADYEIEAAKTDSSKALVQGQVYVMEGELQSGFELPLMKLAVITEEELFKNRIK
KKPRKQKLTNAERIKSYSELQVGDYVVHVNHGIGKYLGIETLEIKGIHKDYLNIHYQGSD
KLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVENSVQDIADDLIKLYAEREA
SKGYAFSPDHEMQRQFESAFPYQETEDQLRSIQEIKKDMERERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVALLVPTTILAQQHYETIMERFQDYPINIGLLSRFRTRKESNETIK
GLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYN
RVDDIERKADEISMLVPDAKVAYAHGKMTENELESVMLNFLEGESDVLVSTTIIETGVDI
PNVNTLIVFDGDKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDIPKSEQFE
TEIDIELDAYIPENYIQDGKQKIDMYKRFRSIATIEEKNELQDEIIDRFGSYPKEVEWLF
TVAEMKVYGKYERVELIKQDKDAIRFTISEEASAQIDGQKLFELGNKYGRQIGLGMEGKK
LKISVQTKGRKTEEWLETVLGMLKGLQDVKKETIPSS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggacaacattcaaacctttattaaagaaagcgatgattttaaatccattgtcaacggt
ttacatgaggggctgaaggaacagctgcttgcgggtctgtcaggttccgcgcgttctgtt
tttacctctgcccttgcacaggaaacgaaaaggccgattttctttatcacccataattta
tatcaggcccaaaaagtgacggaagatctgacggcgcttctcggggatcaatctgttttt
ttataccccgtgaatgaattgatttcttcagaaattgcggtagcgagccctgaactgcgc
gctcagcggcttgatgtcattaatagattaacaaacggagaagcgccggtcgttgtggcg
cccgttgcggcagtgagaagaatgcttccgccgaaggagctgtggaaaagcagccagctc
gtcatttcactcggagacgaaatagaaccggatcagctgtccgcgcgccttgtagaggtg
gggtatgagcgttccgatatggtttctgcacccggtgaattcagtattcgcggcggaatt
atcgacatttatccgctgacgtcggagcatccggtgcgaattgaactgtttgatacggag
gtcgattccatcagaagcttcaattctgatgaccagagatcaattgagacgctcaaacat
gtggcgatcggaccggcgaaggaattgatcatcagggcggaagaaaaagcccgtgcgatg
gaaaggctcgataaagggcttgccgacagtctgaaaaagctgaagcaggacaaacaaaag
gaaatgcttcatatcaatatctcacatgataaagaacggttatcaacgggacagactgat
caggaacttgtgaagtatctctcgtacttttacgaaaagcctgctagtttgctagattat
acaccggcagacacgttgttactgttagacgaggtcagccgcattcatgaaatggaggat
cagctgcaaaaagaagaggccgaatttacgacaggtctgcttgaggaagggaaaattctg
cacgacattcatttatccttcagctttcaggagcttatgagtgaaaagcggcgcccggct
atttattattcattatttttgcgtcatgtccagcatacaagccctcagaatatcgtgaat
gtgacaagcaggcagatgcagagttttcacgggcagatgaatgtgctcgcaggtgaaatg
gagcgctttaagaaatcaaacttcaccgtcgtctttttaggcgcaaataaggacagaacc
gacagattggcatccgtgctggctgattacgaaattgaagccgcaaaaacggacagctcc
aaagcgcttgtgcaaggacaggtctatgtcatggaaggcgagctgcaatccggttttgaa
ctgccgctgatgaagctggccgtcattacggaggaagagctgttcaaaaaccgaattaag
aaaaagccgagaaagcagaagctgacaaatgccgaacggatcaaaagctattccgagctt
caggtcggtgactatgtcgtccacgtcaaccacgggatcggtaagtatttggggatcgaa
acactagaaatcaaaggcattcataaagattacctcaacattcattatcagggcagcgat
aagctgtacgtccctgtagaacaaatcgaccaggtgcagaagtacgtcggctctgaaggg
aaagaaccgaagctttataaactgggcggcagtgaatggaaacgggtgaagaaaaaagtt
gaaaactccgttcaggatattgccgatgatctgattaagctttatgcggaacgggaagca
agcaaaggctatgcgttctcgccggatcatgaaatgcagcggcagttcgaatctgctttc
ccttatcaggaaacagaggaccagctccgttccattcaggagattaaaaaggacatggaa
agagagcgcccgatggaccgtttgctttgcggtgatgtcggttacgggaagacggaggta
gccatccgagcggcctttaaagcgatcgcagacggaaagcaggtcgcgcttcttgtgccg
acgacaatactcgcgcagcagcattatgaaaccattatggagcgttttcaggactatccg
attaacatcggtcttctcagccgattcagaacgagaaaagaatccaatgaaacgattaaa
ggcctgaaaaacggaacggtagacatcgtaatcggaacccacaggctcttatctaaagac
gtcgtctataaagatctcggcttgctcatcattgatgaagagcagcgctttggcgtaacg
cataaggaaaaaatcaaacagatcaaagccaatgtcgatgtgctgactcttacagcgacg
ccgataccgcgtacgcttcatatgtccatgctcggtgtgcgggacttatctgttattgaa
acgccgccggaaaaccgtttccctgttcagacatatgtcgtggaatacaacggcgcgctt
gtgcgggaagccatcgaaagagaactggcgcgcggaggacaggtatatttcttgtacaac
cgcgtggatgacatcgagcggaaggctgatgaaatttccatgcttgttcccgatgcgaaa
gtggcatatgcccacggaaaaatgactgaaaatgaattggaaagcgtcatgctcaatttt
ctggaaggggaatcagacgtccttgtcagcacgactattattgagacaggcgtagatata
ccgaatgtcaataccttgattgtgttcgacggagacaaaatggggctgtctcagctgtat
cagctgagaggacgggtcggccgttccaaccgcgtcgcttacgcgtattttacgtaccgc
agagacaaagtgctcactgaggtggcggaaaaacggctgcaggcgattaaagaatttacc
gagctgggatcaggctttaaaatcgccatgcgtgacttgacgatcaggggagcagggaac
cttctcggcgcccagcagcacggctttatcgactcagtcggttttgacctgtactcgcaa
atgctcaaggaagcgattgaagagcggaaaggcgatattccgaaaagcgaacagtttgag
acagaaatcgatatcgagctagacgcgtatattcctgaaaactatatacaagacggcaag
caaaaaatcgacatgtataaacgcttccggtcgatcgccacaattgaggagaaaaatgag
cttcaagatgaaatcatcgacaggttcggcagctaccctaaagaggttgaatggctgttt
acggttgctgagatgaaggtatacggaaaatatgaacgcgtcgaactcatcaagcaggat
aaagacgcgatcagatttaccatttctgaagaggccagcgcacagattgacggccagaaa
ttgttcgaactcggcaataaatacggccggcagatcggactgggaatggaagggaaaaag
ctgaaaatctcagtacagacgaaaggccgcaaaacggaagagtggctggagaccgtgctc
ggcatgctgaaaggccttcaggatgtgaagaaagaaacaatcccgtcttcataa
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