Bacteroidales bacterium CF: BRDCF_p1030
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Entry
BRDCF_p1030 CDS
T02861
Symbol
ygcA
Name
(GenBank) putative RNA methyltransferase
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bacc
Bacteroidales bacterium CF
Brite
KEGG Orthology (KO) [BR:
bacc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bacc03009
]
BRDCF_p1030 (ygcA)
Enzymes [BR:
bacc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
BRDCF_p1030 (ygcA)
Ribosome biogenesis [BR:
bacc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
BRDCF_p1030 (ygcA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
PrmA
Cons_hypoth95
PabTrmU54_TRAM_dom
R-HINP1I
Methyltransf_11
PCMT
N6_N4_Mtase
TPMT
Motif
Other DBs
NCBI-ProteinID:
AGY53657
UniProt:
U5Q507
LinkDB
All DBs
Position
1228604..1230010
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AA seq
468 aa
AA seq
DB search
MRKRERVILESVEIENIAAEGKSIAHVNGKVLFVPFAIPGDIVDVLVTGKRKSFMEGTVV
RMVKPSAMRIDPFCSHYGVCGGCKWQPLPYQKQLEFKQQQVEDQLVRIGKLDLPEILPIL
GSQKQQYYRNKLEFTFSDKRWVESLNEAENLSDQEKLGLGFHIMGMFDKVLDIKKCYLQE
EPSNKIRLFIKDYAIKNNISFFNLREQTGLLRNMVVRTTTTNEVMLIIVFSSEEPEIIKN
LMNSVAKQFPEITSLNYVINSKKNDTITDLDVVKFKGNEAIYEKMENLRFKIGPKSFFQT
NSEQAYRLYSVVRDFADLKGDEVVYDLYTGTGTIALFLASKAAKVVGVEYVPEAIEDAFV
NASENNINNCSFYAGDMKDMLNKDFIEANGRPDVIILDPPRAGIHPDVAKVIVEAKPSKI
VYVSCNPATQARDIALMSEFYKITKVQPVDMFPHTHHLENVVKLELKS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaagagaaagagtgattctggagtctgttgagatagaaaacattgcagcagag
ggaaaatcaattgcccatgtcaacggcaaggttttatttgttccatttgcaatacccggc
gacatagtagatgttcttgtcaccggcaagaggaaaagttttatggagggaaccgttgta
aggatggttaagccttcagctatgagaatagatccattttgttcgcattatggggtttgc
ggagggtgtaaatggcagccactaccctatcagaaacagctggaattcaagcaacaacaa
gtggaagaccagcttgtacgcattggcaagctcgatttgcctgaaatattgccgatacta
ggatcacaaaagcaacaatattacagaaataagcttgaatttacattctctgacaaaagg
tgggtcgagagccttaacgaggcggaaaacctctcggatcaggagaaattggggcttggg
ttccatattatggggatgttcgataaggtgctggatatcaaaaagtgctatttacaagag
gaaccttcgaacaagatcaggctcttcattaaggactatgcaattaagaacaacatctct
ttctttaaccttagagagcagacaggtttgctgcgcaatatggttgtcaggacaacaacg
actaatgaagttatgctgataatcgtattctcatctgaagagcctgagattattaaaaac
ctgatgaattcagttgcgaaacaattccctgagataacatcactcaactatgtaataaac
agcaagaaaaatgatacaataaccgaccttgatgttgtcaaattcaaaggtaatgaagcc
atttatgagaagatggaaaacctgaggtttaaaatcggacccaagtcatttttccagaca
aattcagaacaggcatacagactatattctgtagtgcgtgattttgccgacctcaaggga
gatgaagttgtctatgacctatacaccggaaccggcactattgctctgtttttagcctcg
aaggctgctaaagtggttggtgttgagtatgttcctgaggctattgaagatgcattcgta
aatgcctccgagaacaacatcaacaattgttcgttctatgcaggcgatatgaaggatatg
ctaaacaaggattttatagaggcaaacggccgtcctgacgttattatcctggatcctcca
agagccggaatacatccggatgtggctaaagttattgttgaggcaaaaccatctaaaatt
gtgtatgtcagctgcaacccggctactcaggccagagatattgccctgatgtccgagttt
tataagattaccaaggttcagcctgtggacatgtttccacatacacaccacctcgagaac
gttgtgaaacttgagttgaaatcataa
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