Bacteroidales bacterium CF: BRDCF_p1378
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Entry
BRDCF_p1378 CDS
T02861
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bacc
Bacteroidales bacterium CF
Pathway
bacc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRDCF_p1378 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bacc03021
]
BRDCF_p1378 (rho)
03019 Messenger RNA biogenesis [BR:
bacc03019
]
BRDCF_p1378 (rho)
Transcription machinery [BR:
bacc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BRDCF_p1378 (rho)
Messenger RNA biogenesis [BR:
bacc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BRDCF_p1378 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
TFIIA
AAA
eIF-3_zeta
Motif
Other DBs
NCBI-ProteinID:
AGY54005
UniProt:
U5Q9G3
LinkDB
All DBs
Position
complement(1624346..1626298)
Genome browser
AA seq
650 aa
AA seq
DB search
MYDIKELSKMGQDDLIAIAQKLNISKAKNFSPEELVYEILDEQARQGSLSNEPIKRPLVQ
RQKKLRIDKSKPTGPAKENPVASENPVKQVKPEAVPVKAEAVKEETPAPKKRGRKPLAVK
LAEQATSKDQPVVAEGGESLEQEKSKSEVKVIERAQNPNQKQPQNLQKGGQIQKGPRPQP
QQGQQSQQNQQLQPQQNQQQGQPQTQQNAQQGNQQHQHQANKQHQAGQQQNRPNPNPNPN
PNPNQTKDNKKHTPVTDEMLSVESVENSMKEQFKKVEFEGTVEATGVLEIMPDGYGFLRS
SDYNYLNSPDDIYLSQSQIKLYGLKTGDTLVGEIRPPREGDKYFPLVKVNQINGRSPEFI
RDRVPFDFLTPLFPEEKFNITSNGHNNLSTRVVDLFAPIGKGQRGLIVAQPKTGKTVLLK
DIANAIAANHPEVYMIVLLIDERPEEVTDMARSVKAEVVASTFDEPAERHVKVANIVLEK
AKRLVECGHDVVILLDSITRLARAFNTVQPASGKVLSGGVDANALHKPKRFFGAARNIEN
GGSLTILATALTDTGSKMDEVIFEEFKGTGNMELQLDRKLANKRIFPAVDVTLSSTRRDD
LLFDKETLNRIWILRNYLADMNSVEAMEFMKTRLIRTDNNQEFLISMNGE
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatataaaagaattaagcaagatgggtcaggatgacttaattgctattgctcaa
aagctgaatatcagcaaagccaagaatttttcaccggaagaacttgtttatgaaatatta
gacgagcaagccaggcagggcagtctctcaaacgagccgataaaacgtccgttagttcag
agacagaaaaagttgcgtatagacaagtctaaaccaacagggcctgcaaaagagaatccg
gttgcatcggaaaatccggttaaacaggttaagcccgaagcagtaccagttaaggctgaa
gctgtaaaagaggagactccggcaccgaagaagagaggaagaaagcctctcgccgttaaa
ttggctgaacaggcaacaagcaaagatcaacctgttgttgcagagggtggtgagtcattg
gaacaggagaaatcgaagagtgaggtaaaggttatagaaagagctcagaatccaaatcag
aagcagccacagaatcttcaaaagggggggcaaattcaaaaagggccaagacctcaacca
cagcaaggacaacaatctcaacaaaatcagcagttgcagcctcagcaaaatcagcaacaa
ggccagccacaaactcagcagaatgcacagcagggcaatcagcaacaccagcatcaagcc
aataaacagcaccaggcgggacaacagcagaacaggccgaatccaaatccaaatccgaat
ccaaatccaaatcaaacaaaggataacaagaaacatacccctgtaactgatgagatgctc
tctgtagagagtgtcgagaacagcatgaaggagcagtttaagaaggttgagtttgaagga
acagttgaggcaaccggtgttctggagataatgcctgacggatatggtttcctcagatct
tctgattataattaccttaactcaccggatgatatatatctttctcaatctcagatcaaa
ttatatggtctgaagacaggcgatactctggtaggggagattagacctccaagagagggt
gataaatatttcccgcttgtgaaggtaaaccagatcaacgggcgctctccggagtttata
agagaccgtgttcctttcgatttcctaacacctctcttccctgaagaaaagttcaatatc
acatctaatggccataataacctttcaaccagagtggtggatctttttgcacctatcgga
aagggacaaaggggtctgattgttgctcagcctaagacaggtaagacagttttgcttaag
gatatagccaatgctattgccgctaaccatcctgaagtatatatgattgtcctgcttatc
gatgagcgtccggaggaggtaaccgatatggctagaagtgtcaaggctgaagttgtagcc
tcaacattcgatgagcctgcagaaagacatgtaaaggtggcaaatattgtactggagaag
gccaagagacttgtagagtgtggtcatgacgtggttatacttctagactcaattacaagg
cttgcaagagctttcaatactgtccagccggcttcaggaaaggttctcagcggcggtgtc
gatgcaaatgccctacataaaccgaagagattcttcggtgctgcaagaaatatagagaac
ggaggttcgctgactattctggccacagcccttacagataccggatctaagatggatgag
gtgatctttgaggagtttaagggtacaggtaatatggagcttcaacttgacagaaaactt
gcaaataagagaatattcccggctgtagatgttacactcagcagcactagaagagatgac
ctattgtttgacaaggagactctcaaccggatatggattctcaggaactaccttgccgat
atgaattccgtagaggccatggagtttatgaagaccaggcttatacgcacagataacaat
caggagttcctgatttcaatgaatggtgaatag
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