Bacteroidales bacterium CF: BRDCF_p857
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Entry
BRDCF_p857 CDS
T02861
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bacc
Bacteroidales bacterium CF
Pathway
bacc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRDCF_p857 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacc03019
]
BRDCF_p857 (cshA)
03009 Ribosome biogenesis [BR:
bacc03009
]
BRDCF_p857 (cshA)
Enzymes [BR:
bacc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BRDCF_p857 (cshA)
Messenger RNA biogenesis [BR:
bacc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BRDCF_p857 (cshA)
Ribosome biogenesis [BR:
bacc03009
]
Prokaryotic type
rRNA helicases
BRDCF_p857 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AGY53484
UniProt:
U5Q868
LinkDB
All DBs
Position
complement(998632..1000608)
Genome browser
AA seq
658 aa
AA seq
DB search
MTNQFQSLGLKDTLIKAITDLGFINPTEVQQRIIPKLISENDDVVCLAQTGTGKTAAFGL
PLLQSIDTSSKETQALILSPTRELCRQIAQDISNYGKYIDNLEIVAVYGGAGIEGQIKAL
KKGCQIIVATPGRMVDLLNRGVASVVNIHTLILDEADEMLNMGFKDELDAILECTPQEKR
TLLFSATLPIEIEGIAKNYMTKPEIVTVGTRNSGSENVKHYYYIVHAKDRYLALKRIADY
NPDIYGMIFCRTRQETQEIAESLIKDGYNADALHGELSQAQRDQVMRRFRSKNLSLLVAT
DVAARGIDVNELTHVINYNLPDEAEQYTHRSGRTGRADKSGISIAIINSKEQHKIRRIEK
IIGKTFGQAKIPTGEEVCTRQMLHLVEEVKNAEIREEISEYINLIDEKWKDVSKEEIIWK
MLSIEFNRFLDYYRHAPDLNIREESSRGEGKGESSFNLPTEKGYSWVKLSIGSKAGITPR
HLLRMFSSCGIGQKGVGRIDIHKEMSFVSVTTNSAAYIVETIDNTDYRGRLLKVEIVTDT
KIKGDRPERRGESEERKGRSDKRRGYSEEGKVNSEKRRGYSEEGKVNSEKRRGYSEEGKV
NSEKRRGYSEEGKVRSEERKGKSDKGRVKSDEFGRKSGKKSSHGKDSRKPSRRERRGR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgacaaatcaatttcaaagcctcggccttaaagatactcttatcaaggccattacagat
cttggctttatcaaccctacggaagtacagcaaagaataatcccgaaactcataagcgaa
aacgacgatgtagtctgccttgctcagaccggaaccggcaaaacggcggctttcggactt
ccattacttcaatcaatagacacaagttcgaaagagacccaggctcttattttaagtcct
acacgcgagctttgcagacaaatcgcacaggacatctcgaattatggcaaatatattgac
aatcttgaaattgttgccgtttatggtggtgccggaatagagggacagattaaagctcta
aaaaaagggtgtcagataattgttgccactccgggcagaatggttgaccttttgaacaga
ggtgtagcctcagtggttaacattcacactcttatacttgacgaagctgacgagatgctc
aatatggggttcaaggatgaacttgacgcaatactcgagtgtacaccgcaagagaaaaga
actttactcttctcagcaacattaccgattgagatagagggcattgcgaaaaactatatg
actaaaccggaaattgtcacagtgggtacaagaaactccggttcagagaatgtaaaacac
tactactatattgttcacgccaaggacagatatctggcactcaaaagaatagccgactac
aatcccgacatatacggtatgattttttgccgcacaaggcaggagacacaggagattgcc
gagtctcttattaaggatggatataatgccgatgcacttcacggagaactttcacaggct
cagcgtgatcaggtgatgagaaggttcagaagcaagaatctaagccttttagttgcaacc
gatgtcgctgccagggggatagacgtgaacgaactgactcacgtaatcaattacaatctt
cccgatgaggctgaacaatatactcacagaagcggaaggacaggtcgtgcagacaagagc
ggaatctcaatagcaattattaacagtaaggaacaacacaagatccgcagaattgaaaag
atcataggcaagacattcggacaggccaaaattcctaccggagaagaggtttgtacacgt
cagatgcttcatcttgtagaggaggtaaagaacgccgagattcgcgaggagatttcggaa
tatataaatctgatagatgaaaagtggaaagatgtaagcaaggaggagatcatctggaag
atgctatcaattgaatttaaccgtttccttgactattacagacacgcccctgatctgaat
atccgtgaagagtcatccagaggagagggaaaaggcgaaagcagtttcaatctgccgaca
gaaaagggttactcatgggttaaactaagtataggttcaaaagccggaataacaccgaga
catcttctaaggatgttctcaagttgcggaataggtcagaaaggcgttggccgcatcgat
atacacaaagagatgtcgtttgtttccgttacgactaattcagctgcttacattgtcgag
accattgacaataccgattatcgcggaagattattaaaagtggaaatagtaacagacacc
aagattaagggtgacagacctgagcgcagaggtgagagtgaagagagaaaagggaggagt
gataagagaagggggtatagtgaagagggaaaagtgaatagtgaaaagagaagagggtat
agtgaagagggaaaagtgaatagtgaaaagagaagggggtatagtgaagagggaaaagtg
aatagtgaaaagagaagagggtatagtgaagagggaaaagtgaggagtgaagagagaaaa
gggaagagtgataagggaagagtgaagagtgatgagtttggcaggaagtccgggaaaaag
agttctcacggtaaagattccagaaaaccgagccgcagggagagaagaggaagatag
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