Bacteroides sp. CACC 737: H1A11_04910
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Entry
H1A11_04910 CDS
T10488
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bace Bacteroides sp. CACC 737
Brite
KEGG Orthology (KO) [BR:
bace00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bace03009
]
H1A11_04910 (rlmD)
Enzymes [BR:
bace01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
H1A11_04910 (rlmD)
Ribosome biogenesis [BR:
bace03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
H1A11_04910 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
N6_N4_Mtase
MTS
Cons_hypoth95
UPF0020
Methyltransf_11
PrmA
PCMT
Motif
Other DBs
NCBI-ProteinID:
QMI81225
UniProt:
A0A7D7BQD4
LinkDB
All DBs
Position
complement(1149459..1150880)
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AA seq
473 aa
AA seq
DB search
MARKRKELPLLEKVTITDVAAEGKAIAKVNDLVIFVPYVVPGDVVDLQIKRKKHHYAEAE
AVKFHEYSAVRAVPFCQHYGVCGGCKWQVLPYSEQIKYKQKQVTDNLTRIGKIELPEISP
ILGSEKTQFYRNKLEYTFSNKRWLTTEEVQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWL
QDDISNRIRNAVRDYAYQHNYSFINLRTHEGMLRNMIVRTSTTGELMVILICKIEKEEEM
ALFKQMLQYIADTFPEITSLLYIINNKCNDTITDLEVHTFKGKDHIFEEMEGLRFKVGPK
SFYQTNSEQAYNLYKVARNFAGLTGNELVYDLYTGTGTIANFVSKHARQVIGIEYVPEAI
EDAKVNAEINGIKNTLFFAGDMKDMLTQDFINQYGRPDVIITDPPRAGMHQDVVDVILFA
EPKRIVYVSCNPATQARDLQLLDAKYKVKAVQPVDMFPHTHHVENVVLLELKD
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
gtggcaagaaagagaaaagaacttcccctactggagaaggtgacaattacggatgtggct
gccgaaggaaaagccatcgcaaaagtcaatgatttggtgattttcgtaccatatgtcgtc
cccggcgatgtagttgacctgcaaattaagagaaaaaagcatcattatgctgaagccgaa
gctgtgaaattccatgaatattcggcagtacgggcagttccattctgccaacattatggt
gtatgcggcggttgtaaatggcaggttctcccctattccgagcaaatcaagtataagcaa
aaacaagtaacggacaacctcacccgcatcggcaaaatagaattaccggaaatttctccg
atattaggttcagaaaaaactcagttctaccggaataaactggagtacactttttccaac
aaacgttggctgacgacagaagaggttcagcagaatgtagtgtacgaacagatgaatgcc
gtaggcttccatattcccaatgctttcgataaagtgcttgccatagagaagtgctggctg
caggacgatatatccaaccgcatccgcaatgcagtacgcgactatgcctaccagcacaac
tattcctttatcaacctgcgcacgcacgaaggaatgctacgcaatatgattgtgcgtacc
tctaccaccggcgaactgatggtaatcctcatctgcaagatagagaaagaggaggaaatg
gctctgttcaagcaaatgctgcaatacatagcagatacattccccgaaatcacttccctg
ctatacattattaataataagtgcaacgataccatcaccgacctcgaggtacacaccttc
aagggaaaagaccacatcttcgaggaaatggagggactgcgcttcaaggtaggtcccaaa
tctttctatcagaccaactccgaacaagcctacaacctctacaaagtagcgcgcaacttt
gccggactgaccggtaacgagcttgtttatgacctttataccggcacgggtaccattgcc
aatttcgtatccaagcacgcacgccaggtaatcggcatagaatatgtgcccgaagccatt
gaagacgccaaggtcaatgccgagattaacggaattaaaaatacattgttctttgccgga
gatatgaaagacatgctgacacaagacttcatcaaccaatacggccgtcccgatgtcatc
atcaccgaccctccccgtgccggaatgcaccaggatgtagtggatgtcattctgtttgcc
gagcccaaacgcatcgtatatgtcagttgtaatccggctacgcaggcgcgcgacctgcaa
ctgctcgatgcgaaatataaagtaaaggccgttcaaccggtagatatgttcccgcacacc
caccatgtggaaaacgtagtattattggaattaaaagattga
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