Bacillus sp. FJAT-18017: AM500_00585
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Entry
AM500_00585 CDS
T10545
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bacf Bacillus sp. FJAT-18017
Pathway
bacf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM500_00585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacf03400
]
AM500_00585
Enzymes [BR:
bacf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM500_00585
DNA repair and recombination proteins [BR:
bacf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AM500_00585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
Zot
RecG_dom3_C
IstB_IS21
RPN5_C
CdvA
Motif
Other DBs
NCBI-ProteinID:
ALC88457
UniProt:
A0A0M5JD12
LinkDB
All DBs
Position
complement(101146..104691)
Genome browser
AA seq
1181 aa
AA seq
DB search
MEGLTTLFLKQEDIQSIISGLKGGLREQLVAGLSGSSRTVMVAAIHNQTKRPVLLVTHNL
LQAQKLYDDLVNLIDEREVYLFPANELIAAEMSIASPELRAQRIEVLNNWSNGVNGILVT
PVAGLRKILPPVDVWSKYKMLIQLGEDIDIDELLLDFVRMGYIRSEMVATPGEFSVRGGI
VDIFPLTEADPIRIEFFDTEVESIRTFSLEDQRSKKKLSKAVIGPANEIPLEEANYIRLY
EKLKAQLGASLKKIKDEKAKQQLSQNISFELEQFKNGQRTDDIFKYVSLAYESQASLLDY
FPANGLIVVDEVSRVHEMNESLDKEEAEWYTSLLSEGKIVHDLLLSHNAQELFQTSKKPV
LYLSLFLRHVANTSPQNIINLSSRQMQNFHGQMHLLKTELERWRKGGYSVVFLGPDKERV
DKLQRVLGDYEIEAGLAERTSKLLPGTVQIIPGSLQGGFELPMQRLAVITEEELFNKRPK
RSRQRQKLSNAERLKSYSELKIGDYVVHINHGIGKYLGIETLVINGVHKDYLHIRYQGSD
KLYVPVEQIDLVQKYVGSEGKEPKIYKLGGSDWKRVKKKVESSVQDIADDLIKLYAEREA
AVGYAFSPDGEMQREFEASFPYQETEDQLRSIHEIKYDMEKLRPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAFLVPTTILAQQHYETVRERFQDYPINIGLLSRFRSRKQQTETLK
GLKAGTVDIVIGTHRLLSKDVVYRDIGLLIIDEEQRFGVTHKEKIKQLKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGALVKEAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTYAHGQMSENELESVMISFLAGDFDVLVSTTIIETGVDI
PNVNTLIVHDADRMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKVLNEVAEKRLHAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERQSTGKEQVAQT
IEIDVEIDAYIPESYIRDGHQKIEMYKRFRGASELGEIEELEAEMKDRFGEYPDEVAYLF
QVAEIKVHGRRAGIESIKQTKDIITLLLSERSVTEIPGDKIIGVTEPYGRAAGFEMDGKK
FKINLNKKGMDTAVWLHAIYQMTKGLDDAHTNTMASKKSVH
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcctaacaaccttgttcctcaagcaggaggacatacaatcaattattagcggt
ttgaaaggcggcttgagggaacagctggtagcgggcttgtctggatcatccaggacagtt
atggttgcggcaattcacaaccaaacaaaaaggccagttctccttgtcacccataactta
ctgcaagctcaaaaattatatgatgatctagttaatcttatagatgagagggaggtttat
ttatttccggcaaatgagctaattgctgcggaaatgagtatcgccagtccggaacttcgc
gcccaaaggatagaagtgttaaacaattggagcaatggtgtgaacggaatattagttaca
cctgtagcgggattaagaaaaatactcccccctgtcgacgtttggtccaagtacaagatg
ctgattcaattaggtgaagatattgacatagatgaactgttgctggattttgttagaatg
ggatatattcgctcagagatggttgcaacacctggggaattcagtgtccggggcggaatt
gtcgatatctttcctctgacagaggccgatcccattagaattgaattttttgatactgag
gtagagtcaatccgaacattctctcttgaggatcaaaggtcaaagaagaagttatccaaa
gcagttattggacctgccaatgaaataccgttagaggaagcgaattatataaggctttat
gaaaaacttaaggctcaattaggagcgagccttaaaaaaataaaggatgaaaaagcaaaa
cagcagctttcccaaaatatatcatttgaattggagcaatttaaaaacgggcagcgtacg
gatgatatttttaaatatgtatcgcttgcatacgaatcccaagctagtttactagattat
ttccctgccaatgggctaattgtggtcgatgaggtcagcagggttcacgaaatgaatgaa
agccttgataaagaagaggcagaatggtacacatctcttcttagtgaaggtaaaattgtt
catgacttattgctttcccataacgctcaagagttgttccagacttcaaaaaaaccagtt
ttgtacctatcgctttttcttcggcatgtagctaataccagtccgcagaatataatcaat
ctttccagcaggcaaatgcaaaatttccatggacaaatgcacctgcttaagacggaattg
gaacgctggagaaagggaggctactcagttgttttccttggccctgacaaagaaagagta
gataagctgcagcgtgtcctcggtgactatgaaattgaagcaggccttgcagaaaggaca
agcaaactgttgcccggaactgtacagattattccaggaagcctgcaaggcggctttgaa
cttccgatgcagcggctcgcagttattaccgaagaggaattattcaataagcggccaaag
cggtctcgccagcggcaaaaattatcaaatgcagagcggctaaaaagttactcggagctt
aagattggtgactatgttgtccatataaaccatgggattggaaagtatcttggaatagag
accctggtcattaacggggttcataaggattatttgcatatccgttatcaggggtcagat
aagctttatgttcctgttgaacaaatagacctagtccaaaaatatgttggttctgaaggc
aaggaacctaaaatttataagcttggcggaagtgactggaaaagggttaagaaaaaggtt
gagtcatccgttcaggatattgcagatgatcttattaagctttacgcagagcgtgaagct
gccgtaggctatgccttcagccccgatggtgaaatgcagcgtgaatttgaggcatctttc
ccttatcaggaaaccgaagatcaactccgttctattcatgaaattaagtatgatatggag
aaattacggccaatggatcggcttctttgtggcgatgttgggtatggaaaaactgaagta
gccattcgggcagcttttaaggctattgctgatggaaaacaggttgcctttttagtaccg
acaacaatattggcacagcagcattacgagacagtgagggaacgatttcaggactatcca
ataaatatcggactattaagcaggttcaggtccagaaagcaacaaactgaaacgctaaag
ggcctgaaagctggaactgttgatattgttataggaacgcaccgtctcctctcaaaagat
gtcgtgtatagggatatcggattgttaattattgatgaggaacaacggtttggtgtgact
cataaagaaaaaatcaagcaattgaaaacaaatgttgacgttctgacattaactgccaca
ccgattcctaggacacttcacatgtcaatgcttggggttagggatttgtccgttatagaa
acgcctccggaaaaccgttttccgatacagacatacgtaatggaatataatggtgcactc
gtaaaagaagcgattgaaagagagcttgccagggatggtcaagtatatttcctttataat
cgagtagaggatatcgaacgtaaggcagaggagatttccatgttagttccagatgcccga
gttacctatgcacacggccaaatgtccgaaaatgaattggaatccgtaatgatcagcttt
cttgccggggactttgatgttttggttagcacgacaattattgagacaggagtagacatt
ccaaatgtaaacaccttaattgtccacgatgccgacaggatggggttatcacagctgtat
cagttgcgtgggcgggtagggcgttctaaccggattgcctatgcttactttacctatagg
aaagacaaggtattgaatgaagttgctgaaaaaaggcttcatgcgataaaggagttcaca
gagctagggtcgggtttcaaaattgctatgagagatttatccatcagaggagctggtaac
ctgttaggtgcccagcagcatggctttatagattccgtcggttttgacctgtattcacag
atgctgaaggaagcaattgaagaaaggcagagtactggaaaagaacaggttgcacaaaca
atcgagattgatgtggaaatcgatgcctatatccctgaatcctatattcgggatggccat
cagaagattgagatgtacaaacgattccgtggagcgtccgagcttggtgaaatagaggaa
ctggaagcagagatgaaagaccgctttggggagtatcctgatgaagtagcatatctgttt
caggttgcagaaatcaaagttcatggacgaagggctggaattgaatccattaagcaaacc
aaagatatcattacacttcttttaagcgaaagatcagttactgaaatccctggtgataaa
atcattggtgtcaccgagccatatggccgcgcggctggttttgaaatggacgggaagaag
tttaaaatcaatctgaacaaaaaaggaatggatactgcggtttggctgcatgcaatttac
caaatgacaaaaggcttggatgacgcacacactaatacgatggcgtcaaaaaaatcagtc
cattaa
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integrated database retrieval system
