Bacillus sp. FJAT-18017: AM500_01890
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Entry
AM500_01890 CDS
T10545
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bacf Bacillus sp. FJAT-18017
Pathway
bacf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM500_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bacf03021
]
AM500_01890
03019 Messenger RNA biogenesis [BR:
bacf03019
]
AM500_01890
Transcription machinery [BR:
bacf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AM500_01890
Messenger RNA biogenesis [BR:
bacf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AM500_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
AAA
AAA_22
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ALC88686
LinkDB
All DBs
Position
382493..383773
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AA seq
426 aa
AA seq
DB search
MELTITSLENMKLKELYELARQYKVSYYSKLTKKELIFSILKARAEEQGFFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKESERYYGLLHVEAV
NGENPESAKERVHFPALTALYPDRQVKLETTPKYLSTRIMDLVAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAEKRIFPALDIRR
SGTRKEELLLPKDHLDKLWAIRKSMSDSPDFAERFLKKLRQTKSNEEFFAQVGEEMKAST
SRRQQS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacaattaccagcctcgaaaatatgaaattaaaagaactatacgaacttgcg
aggcaatacaaagtttcttattacagtaagctgacaaaaaaggaattgattttttcaatt
ctaaaagctcgcgcggaagagcaagggtttttctttatggaaggcgtcctggaaatcatc
cagtcggagggatttggtttccttcgcccgatcaactattccccaagctcggaggatata
tatatttccgcttcgcaaatccgccgttttgacttaaggaatggggacaaagtatctgga
aaggtaaggcctccaaaagaaagtgagcgctattatggacttctccatgtagaagcagtc
aatggtgaaaatcctgaatctgcaaaagaacgagttcacttcccggcattgacggctctg
tatcctgataggcaagtcaaactggaaacaactccaaagtatctttccactcggattatg
gatctggttgcacctgtcgggtttggccagcgtggtttaattgttgcaccgccaaaggca
ggcaagacgatgctattaaaggaaattgccaacagcataacaaccaatcatccggaagcg
gaactgattgtgcttttaatcgatgagcgccctgaggaagtaaccgatatcgagaggtct
gtagccggcgatgtcgtaagttcaacttttgacgaagttccggaaaatcatataaaggtt
gcggaacttgtactggaacgggcaatgagacttgttgaacataagaaagatgtcattatc
ctaatggatagcattacccggctggcgagggcgtataaccttgtcatcccgcctagtggc
cgtaccctgtcaggcggtatcgaccctgctgcattccaccgtccaaaacgtttctttggt
gctgcaaggaatatcgaagagggaggcagcttgactatccttgctacagctcttgttgat
acaggttcaaggatggatgatgtcatttatgaggaattcaagggtacaggaaatatggag
cttcatcttgaccgttcacttgcggagaaaagaatattccctgccctcgatatccgccgt
tctggaacaagaaaggaagagctgctcctgccgaaggaccatcttgacaaactctgggct
atcaggaagtcaatgtccgacagtcctgattttgcggagcgcttcctgaaaaagctaagg
caaacaaaatcaaatgaggaattttttgctcaagttggcgaagaaatgaaagctagcacc
tcaagaagacaacaatcataa
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