Biomaibacter acetigenes: D2962_00885
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Entry
D2962_00885 CDS
T09817
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bacg
Biomaibacter acetigenes
Pathway
bacg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D2962_00885 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacg03400
]
D2962_00885 (mfd)
Enzymes [BR:
bacg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D2962_00885 (mfd)
DNA repair and recombination proteins [BR:
bacg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D2962_00885 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
ERCC3_RAD25_C
NEPRO_N
Motif
Other DBs
NCBI-ProteinID:
AYO29349
UniProt:
A0A3G2R1X8
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All DBs
Position
207395..210928
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AA seq
1177 aa
AA seq
DB search
MLSIATICEEIPEFNKLVKDLEKGLSNLFAYGVSDSQRAFLIAAMKKRTKSQILVVTPDS
LEAKKLADDLSFFLKPEEVALFPASSVIPYETAARSLESTAQRLKVMEMLLAEKSIVVVA
PVQALFNKLVPPEIVKNFTLHFKVGESIPLEDVILKLSAMGYERVDMIEGRSQFAVRGGI
LDIYPLTAEYPYRMEFFDDEVDSIREFLPEDQRSKTKLEEICVGPAREVIYDGETAKRAA
INIAGELKKRGEILNSLGQEKIARHLEEKVQEHIEKLQNGLFFEAAELYISHLYPSLATL
MDYFSRKPVTVLIEPGRIREARENAAFETEETFKGLLERGEILASQANIYYSPFEMLEKL
KEFKIIYISILPKIHPEFEPRGLYSFQFRSMTPLYGKLDLLVEEITRLKKRKYRVLVLSG
TAERGEHMLRSLKERNLEVSMFLNLEEFQPGQVAIVPGTLERGFEEPQSKFAIISDMEVY
GRPRKQQPRPRPSAKGKKIAGYQELTVGDYVVHTAHGIGKYLGVETLEVAGHKKDYFALS
YAGGDKLYVPTDQVDLIQKYVGSDENPPRLNKLGGSEWNKAKSKAKEAVQEMAQELIKLY
AARQATKGFAFSKDTPWQKEFEDMFPYEETPDQLTAIEEVKRDMESDRPMDRLLCGDVGY
GKTEVALRAAFKAVMDAKQVAVLVPTTILAEQHYHTFTERFAPFPVKIDVISRFKSPAEQ
KEILKKLKDGEIDIIIGTHRLLQKDVKFKDLGLLVVDEEQRFGVSHKEKIKQLKKNVDVL
TLTATPIPRTLHMAMSGVRDMSIIETPPEDRFPIQTYVVEHNESLIRDAILRELSRGGQV
YYVYNRVETIHEEARSLQRLVPEARIAVAHGQMHEDELEEVMLNFYDHNFDVLVCTTIIE
TGLDIPNVNTLIITSADKLGLSQLYQLRGRVGRSNRQAFAYLTYKKDRILSETAEKRLSA
IREFTEFGSGFKIALKDLEIRGAGNLLGTEQHGHMMAIGYDLYTKLLSAAVKELKGEKME
EEVQPVIELSISAYISDDFVSNTAQKMEIYRRIAGVETIEEADDLEEEIEDRFGDIPEPA
RNLIEISRIKVRARKLKIASIIQQGELIKFQFQNARALTPEMIFRLSAAFQKQLNFLGST
VPSFTLKTRGLEGYKLLSRIEKILDEMNTMQESCSVV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgttaagcattgccacaatctgtgaagaaatcccggaattcaataaacttgtgaaagac
ctggaaaaagggctttcaaacctctttgcttacggcgtttccgactcccagagggctttt
ttgatagccgcgatgaaaaagaggacaaaatcccagattcttgtggttactcccgattca
ttggaagccaaaaagcttgctgatgacctctcatttttcctgaagccggaagaggtggcc
ctgttcccagccagttccgtcataccttacgaaacggcggccaggagccttgaatccaca
gcccagaggcttaaagtcatggagatgcttctggcggaaaagtccatagtggtggtggca
cccgtacaggcccttttcaataagctggtgccgcctgaaatagtgaagaatttcacattg
cattttaaagtcggggaatccattcctctggaagacgtgatattaaagctatcagccatg
ggttatgagagggtggatatgatcgagggccgcagccagtttgcggtgagagggggaatt
ctggacatttaccctctgaccgcagagtacccctaccgtatggaatttttcgatgacgag
gtagattccatccgggaatttcttcccgaagaccagcgctcaaaaaccaagctggaagaa
atatgtgtagggccggccagggaagtgatatacgacggagaaaccgcgaaaagagcggcc
ataaacatcgccggagaacttaaaaaacgcggggagatactgaattccctgggccaggaa
aaaattgcccggcacctggaagaaaaggtacaggagcacattgaaaagcttcaaaacggg
cttttctttgaagcggcggagctttatatctcccacctttatccttctcttgccaccctg
atggactatttttcccgaaagcctgtaacggtgctcatagagccgggccggattcgcgaa
gcacgggaaaatgctgcctttgagacggaggagaccttcaaggggctgctggagagggga
gaaattctggcttcccaggccaatatctactacagtccctttgaaatgctggaaaagctc
aaagaattcaaaattatctacatatccatacttcccaagatacacccggaatttgaaccc
cggggtctttattccttccagtttcgttccatgactcccctctacggcaagctggacctg
ctggtggaagaaataacccggctaaagaaaagaaaataccgggttctggtactgtcagga
acggccgagcggggggaacacatgttaagaagcctcaaggagaggaatcttgaggtaagc
atgtttttaaacctagaggagtttcagcccggccaggtggccattgtgccgggcaccctg
gaaaggggatttgaagaaccccagtccaaatttgccattatatccgatatggaagtctac
ggcaggcccaggaaacagcagccccgccccagaccctctgcaaagggcaagaaaatcgca
ggttaccaggaactcacggtgggagattatgttgtccataccgcccacggcatagggaag
tacctgggtgtggaaaccctggaagtagccggccataaaaaggattattttgccctgagc
tatgccggaggggataagctttatgtccccaccgaccaggtggatttgatccagaaatat
gtgggatctgacgaaaatcctcccaggcttaacaagttagggggcagtgagtggaacaag
gccaaaagcaaggcaaaagaggctgtccaggagatggcccaggagctcataaagctttat
gccgcccggcaggccacgaagggctttgccttttccaaagatactccatggcagaaagaa
ttcgaggacatgttcccctatgaagaaacccccgaccagctcaccgctatcgaagaagta
aaaagggacatggagagcgacagacccatggaccggctgctgtgcggcgatgtgggatac
ggcaagacagaggttgccctgagggcggcctttaaggcggtgatggatgccaaacaggtg
gcggtgctggtgcccacaaccatactggctgaacagcattatcacacctttaccgagagg
ttcgctcctttcccggtgaagatagatgtcatcagcaggtttaaatctcccgccgaacaa
aaggagatactaaaaaaacttaaggatggagagatagacatcatcatcggcacccaccgc
ctcttgcaaaaggatgtgaaattcaaggacctggggcttctggtggtagatgaggagcag
aggttcggggtatcccacaaggaaaagataaaacagctcaagaaaaacgtggatgtgctg
accctcaccgccacacccattcccaggaccctgcacatggccatgagcggcgtgagggac
atgagtatcatagagacacccccggaggaccgctttcccatacagacctatgtggtggag
cataacgagtccctcatcagggatgccatcctgcgggaactttcccgggggggacaggtt
tactatgtatataacagggttgagaccatccatgaagaggcaaggagcctccagaggctg
gtgcccgaggccaggatcgccgtagcccacggccagatgcacgaggacgaactggaagag
gtgatgctcaatttctatgatcacaatttcgatgtgctggtatgcaccaccatcatagag
acaggtcttgacatacccaatgtgaacacactcataatcacctcggcggataaactggga
ttgtcccagctttaccagctcaggggaagggtggggcgatccaaccgacaggcctttgcg
tatctaacatacaaaaaggacaggatattgagcgaaaccgccgaaaagaggctttcagcc
ataagggaatttaccgaattcggatccggatttaagatagccttaaaggacctggaaatc
cgcggtgccggaaacctcctgggtaccgagcagcacgggcatatgatggccataggatat
gacctttacactaagctgctatcggcggcggtgaaggaactcaagggagagaagatggag
gaagaggtacagccggtaatagagctttccatcagcgcctatatttccgatgatttcgtg
agcaataccgctcagaaaatggagatttaccgccgcatcgccggagttgaaacaatagag
gaggccgatgatctggaggaggaaattgaagaccgtttcggggatatacccgaacctgcc
agaaacctcatagagatttccaggataaaggtgcgggccaggaagctgaaaattgccagt
attatacagcagggagaacttataaaattccagttccagaatgcccgagccctgacaccg
gaaatgattttcaggctcagtgcggcctttcaaaagcagttaaactttttgggcagcacc
gtgccatcgtttaccctgaagacccggggcctggaagggtacaaattgctgtcacgcata
gagaagatattggatgaaatgaacactatgcaggaatcctgcagtgtagtataa
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