Bacillus sp. 1s-1: CJO35_07610
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Entry
CJO35_07610 CDS
T11357
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bacj Bacillus sp. 1s-1
Pathway
bacj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bacj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CJO35_07610 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacj03400
]
CJO35_07610 (ligD)
Enzymes [BR:
bacj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CJO35_07610 (ligD)
DNA repair and recombination proteins [BR:
bacj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CJO35_07610 (ligD)
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
ASV15022
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Position
complement(1469785..1471635)
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AA seq
616 aa
AA seq
DB search
MGITMQPVLTTSAPSGGNWRYEVKYDGYRGLLKIAATGEVSLISRNSQPLENTFPEISEF
AKSMIETLKEHLPITIDGEIVSLTNRFRSRFEYVQKRGLSKKAELIAQAAAKKPCQYLAF
DLLVFNGESLTSLPYTERKRMLFDLMKELGLPMAPDPMAHARIQYIPDTSDFHDLWKAVK
RFDGEGIVAKKKDSRWAENKKTAEWLKLKNYKKAAVFMTGYNMANRYLTIAVYDRGQIKE
VGSVSHGLGEQERNAILSIVKQYGTETKPGEYTIDPSICMTVHYLTIHYGTLREVSFVSF
EFDMAWENCTYNRLLLHSRNVHPDLQLTSLDKVIFPKSDKTKADYIGYLNEIGDFLLPFL
DNRALTVIRYPHGSGGESFFQKNKPDYAPEFITSIRDDEHEHIICSDYSVLLWLANQLAL
EFHIPFQTVDTAHPTEIVFDLDPPSKSEFPLAVRAAKELHRLFDQLGLLSFPKLSGNKGI
QIYIPISKNAFTYEETRLFTSFAASYCVSLFPDLFTTERLIKNRGGKLYIDYVQHAPGKT
IICPYSTRGNELGTVAAPLFWDEVHSDLSPLNFTMEAVVKRTKELGCPFESFFRQPQDKQ
IKAILDHLKENNRSEN
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgggaattacgatgcagcctgtattgactacatcagctccctcaggcggcaattggcgg
tatgaagtcaaatatgacgggtatcggggtcttttaaagattgctgcgaccggcgaagtt
tcgctcatcagcagaaactcacagccgctcgaaaacacatttccggaaatttcggaattt
gcaaaaagcatgatcgaaactctcaaagaacacttgccgatcacgattgacggggaaatt
gtgtcgttgacaaaccgttttcgttcccgatttgaatatgtccaaaaaaggggtttgagc
aaaaaggccgagttgattgcacaagcagccgcaaagaaaccgtgccagtacttggctttt
gatttactggtttttaacggagaaagtttaacctcgctcccctataccgaacgaaaacgc
atgcttttcgacctgatgaaagagctcggcctgccgatggctcccgatccgatggctcac
gctcgaattcaatacatccctgacacttctgatttccacgacctttggaaggctgttaaa
aggtttgacggcgagggaattgtcgcgaagaaaaaagacagccgctgggctgaaaataaa
aaaacggccgaatggctcaaactcaaaaactacaaaaaagctgctgtatttatgacaggc
tacaacatggcaaaccgttatttgacaatcgccgtctatgaccgcggtcaaatcaaggaa
gtcggttcggtttcccacggactcggagaacaggaaagaaacgccattctttcgatcgtc
aagcaatacggaaccgaaacaaaacccggtgaatataccattgatccgtcgatttgcatg
acggtccattacttaacgattcattacgggacattgcgcgaggtgtcgtttgtttcattt
gaatttgacatggcatgggaaaattgcacttacaaccgcctgctgcttcattcaagaaac
gtccatcccgatttgcagctgacaagccttgataaagtcatctttcctaaaagcgataaa
acaaaagcggattacatcggataccttaatgaaatcggcgattttctgcttccgtttctc
gacaatcgggcgcttaccgttatccgttatccgcacggttccggcggagagtcttttttt
caaaaaaacaagcccgactacgcacccgaatttatcacgtccattcgggatgacgagcac
gagcatatcatctgcagcgattattcggttctgctgtggcttgccaatcagcttgcgttg
gagttccatatcccttttcaaacggtggatacggcccatccgaccgaaatcgttttcgat
cttgatccgccttcaaagtcggagtttccgctggccgtcagagccgcgaaagagctgcac
cgtttatttgatcagctcggcctcttatcttttccaaagctgtcgggaaataaagggata
caaatctatattccgatttcaaaaaacgcctttacttatgaagaaacccgccttttcaca
agctttgcggcttcttattgcgtctcgctttttcccgatctgttcacaaccgaacgcctg
atcaaaaacaggggcggaaagctctatattgactatgtgcagcatgccccgggaaaaacg
atcatctgcccgtattccacaagaggcaatgagcttggcacagtggccgcaccgctgttt
tgggatgaagtccattcagacttgtcacccttaaattttacgatggaggctgtcgtcaaa
cgcacaaaggaactcggatgccctttcgaaagcttcttcagacagccccaggacaaacag
atcaaagctattctcgatcacttaaaagaaaacaaccgttcggaaaactga
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