Bacillus sp. BS34A: BS34A_22520
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Entry
BS34A_22520 CDS
T03833
Symbol
yorK
Name
(GenBank) single-strand DNA-specific exonuclease YorK
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bacl
Bacillus sp. BS34A
Pathway
bacl03410
Base excision repair
bacl03430
Mismatch repair
bacl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bacl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BS34A_22520 (yorK)
03430 Mismatch repair
BS34A_22520 (yorK)
03440 Homologous recombination
BS34A_22520 (yorK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacl03400
]
BS34A_22520 (yorK)
DNA repair and recombination proteins [BR:
bacl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BS34A_22520 (yorK)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BS34A_22520 (yorK)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BS34A_22520 (yorK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF5802
Rib_mS39_PPR
Motif
Other DBs
NCBI-ProteinID:
CEJ77666
LinkDB
All DBs
Position
I:complement(2197538..2199268)
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AA seq
576 aa
AA seq
DB search
MEYRLIGDNDYNFDPLATILKNRGIEDPKLFVNVDQSSVIHYSKLNNIDKAADCLIRHLN
NKNKLFVQVDSDVDGYTSSSIIINYIKKICPKANIHYRIQDGKEHGIFIDTIPDDVDLVI
IPDAGSSQFEEHEALNKRGTEIIVIDHHECERVSEHAIVVNNQLSPNYSNKTLTGAGMAY
KFCQAIDEKLNKNEAEQFLDLVSIGNIADSADSRNLETRYFMNEGLKKIKHPLLKKLFKK
QEFSTKGDKSIQNTQFFINPLINAAIRVGSSEEKDQMMRAFLLSKEKVPYKKRGQSETEL
VSIHEDTVRILGNLKAKQKRIVDAAGVEIKNRIEEKSLTANKVLIVYIEGILDKSLTGLV
ANQLAEEYKKPVLLARNDPEKGKDILSGSIRGYDKGFIKDFKKELIDTGLFEFVEGHPNA
AGFAIKRQNLILVNKVLNEKFKDINIEEDIQNVDFEIPAKRLRKEFILQLDGYKDYWGYK
VEEPLIAITDLEIEVEQIEHLGKKNKTTVKFKHGDIEYIRFKSDENYFNQLTASNGTLVI
NVIGKAKANEYKGKKTPQIEIYELEVVRTKQKELVF
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggagtatagactaattggcgacaatgattataatttcgatcctttagctactatctta
aaaaatagaggcatagaagatccaaagttgtttgttaatgttgatcaaagttcagttatt
cattattcaaagcttaataatattgataaagctgcagattgtcttatcaggcatttaaat
aataaaaataaattgtttgttcaggtagacagtgatgttgatggatacacatccagctca
atcattataaattacataaagaagatttgtccgaaagctaatatacactacagaattcaa
gatgggaaagagcatgggatttttattgatacaattcctgatgatgttgacttagtcata
atcccagatgcaggttcaagtcaatttgaggaacatgaggctcttaataagagaggcaca
gaaataattgttattgatcaccatgaatgtgaacgagtgtctgaacatgcgatcgtagta
aataatcaactttcgcctaattattcgaataaaactctgacaggtgcaggaatggcctat
aaattttgccaggcaattgatgaaaagctaaataaaaatgaagccgaacaattcttagac
cttgtatctattggtaacattgctgattcggctgattcaagaaaccttgaaaccaggtat
tttatgaatgaaggcttgaagaaaataaaacatccattattaaagaagctgtttaagaag
caagagttttcaaccaagggtgacaagagcatacagaatacacagttctttattaaccct
ttaattaacgctgccattagggttggaagcagtgaagaaaaagatcaaatgatgagagca
ttcctcctttctaaagaaaaggttccctacaaaaaacgtgggcaaagtgaaactgagctt
gtatcaatacatgaagacacagttaggattctaggaaatctaaaagcaaagcagaaacgg
attgtagatgcagctggagtggaaattaaaaatagaatagaagagaaaagtttaacagcg
aataaagtactcattgtttacattgaaggaattctagataaaagcctaactggactggtg
gccaatcagcttgcagaagaatataaaaagccggtcttgttagccagaaacgatcccgaa
aaaggtaaagatatcttgagtggctctatacgaggatatgataaagggtttataaaggat
tttaagaaagagcttatagatactggattatttgagtttgttgaaggtcacccaaatgca
gcgggctttgcaattaaacgacagaacttaatcctggtgaacaaagtgctgaatgaaaaa
tttaaagacataaatatcgaagaagatattcagaatgttgattttgagatcccagcaaaa
cgattgagaaaagaatttatccttcaacttgatggttacaaagactattggggttacaaa
gttgaagaacccttaatagctataacggatcttgaaattgaagtcgaacaaattgagcat
ttagggaaaaagaataagacaactgttaaatttaagcatggcgatattgaatacataagg
tttaaaagtgatgagaattactttaatcagcttactgcatcaaatggaacgttagtcatt
aatgtaattggcaaagcaaaggcaaatgaatacaaaggcaagaaaacacctcaaatcgag
atttatgaattggaggtggttcgcacaaaacaaaaagaacttgtgttttaa
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