Bacillus sp. OxB-1: OXB_0480
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Entry
OXB_0480 CDS
T03635
Name
(GenBank) ATP-dependent RNA helicase exp9
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
baco
Bacillus sp. OxB-1
Pathway
baco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXB_0480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baco03019
]
OXB_0480
03009 Ribosome biogenesis [BR:
baco03009
]
OXB_0480
Enzymes [BR:
baco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OXB_0480
Messenger RNA biogenesis [BR:
baco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OXB_0480
Ribosome biogenesis [BR:
baco03009
]
Prokaryotic type
rRNA helicases
OXB_0480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAQ08952
UniProt:
A0A0A8JF26
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All DBs
Position
complement(489638..491122)
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AA seq
494 aa
AA seq
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MTNFSELNISESTQNSLKRMGFEEATPIQEGTITFGMEGRDIIGQAQTGTGKTAAFGIPI
IEKIDTSNPAVQALVIAPTRELAIQVSEEIYKIGYGKRARILSVYGGQEIGRQIRALRNN
PQIVVGTPGRILDHINRKTLKLSGVQTLVLDEADEMLNMGFIEDINTILASVPEERQTLL
FSATMPGPIRKIAETFMKNPEVVKIKSKEMTVENIDQYFVKAHESEKFEILSRLLNVHQP
ELAIVFGRTKRRVDELSHALSIRGYLAEGIHGDLTQAKRMSVLRQFKENKIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGMAITFVTPREMGYLRIVEETTK
KRMTPLRPPSSDEALVGQQRVAVEQLTEVIEKNELSDYSQLAAELLEKFDANDLVAAAIK
SLTKEPDGTPVSITEERPLPMRRGSSQNRGGYKGNRSGGGRSFGGSRSGGSRRSGGRDGS
RRDGNRSRSNKYDR
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagagttaaatatcagtgaatcgacacagaattcactgaaacgaatg
ggttttgaagaagctaccccaatccaggaaggcaccattacattcgggatggaaggccgg
gacatcattggtcaagcccagacaggtacgggaaaaacagccgcttttggaattccgatt
attgaaaaaattgacacgagcaatccggctgtacaagcgcttgtcattgccccgactcgt
gaattggctatccaggtttccgaggaaatctataaaatcggttatggtaaacgggcccgc
atcctttccgtttacggcggtcaggaaatcggacgtcaaattcgtgcgttgcggaataat
ccgcaaatcgtcgtagggacgccaggtcgtatcttggaccacatcaatcgtaaaacatta
aagctgtctggcgttcaaacgcttgtattggacgaagcagatgaaatgttgaacatggga
ttcatcgaagacatcaacacaatcttggcaagtgtgccggaagagcgccaaacgttgcta
ttctcggcaacgatgcctggaccaatccgcaaaatcgcggaaacgttcatgaagaaccca
gaagtcgtcaaaatcaaatcaaaagaaatgacagtcgaaaacatcgaccaatatttcgtc
aaagcgcatgaaagcgaaaaattcgaaatcctatcccgtttattgaatgtccaccaaccg
gagttggcgatcgttttcggacggacgaagcgccgtgttgacgagttgtcacacgcgttg
agcattcgcgggtacttggcagaaggaatccatggcgatttaacacaagccaaacggatg
tcagttcttcgccagttcaaggagaataaaatcgatgttcttgtcgcgacagacgtggcg
gcacgtggactcgatatttcaggtgttactcacgtatacaacttcgatatcccgcaagac
ccggaaagctatgtgcaccggattggtcggacaggccgcgcaggtaaaagcggaatggct
atcacattcgtgacgccacgtgaaatggggtacttgcgaatcgtcgaggaaacgacgaaa
aaacgcatgacaccacttcgtccaccatcctcggatgaggctttggtcgggcagcaacga
gtagctgtggagcagttgacggaggtcatcgagaagaacgaattgagcgattactcacag
ttggcagctgaactacttgaaaaattcgatgccaatgacttggtagcagcagctattaaa
tcattgacgaaagaaccggatggaacgccagtatccattacggaagagcgtccgttgccg
atgcgccgtggttcctcacaaaatcgcgggggctataaaggcaatcgcagtggaggcggc
cgttcctttggtggaagccgtagcggcggatcacgtcgcagcggtggccgagacggttca
cggagagacggaaatcgctcacgctccaacaaatacgatcggtaa
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