Bacillus sp. OxB-1: OXB_1418
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Entry
OXB_1418 CDS
T03635
Name
(GenBank) transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
baco
Bacillus sp. OxB-1
Pathway
baco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXB_1418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baco03021
]
OXB_1418
03019 Messenger RNA biogenesis [BR:
baco03019
]
OXB_1418
Transcription machinery [BR:
baco03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OXB_1418
Messenger RNA biogenesis [BR:
baco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OXB_1418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA_25
NACHT
AAA
Tricorn_C1
Motif
Other DBs
NCBI-ProteinID:
BAQ09889
LinkDB
All DBs
Position
1454256..1455539
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AA seq
427 aa
AA seq
DB search
MTMITISALENMTLKELYSLAKQYKISYYSKLTKKELIFAILKSRAEQEGYFFMEGVLEI
IQSEGYGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVTGKVRPPKESERYYGLLHVEA
VNGEDPEVARERVHFPALTPLYPDRHIKLETSPTKLSTRIMDLVSPVGFGQRGLIVAPPK
AGKTMLLKEIANSITTNHPETELIVLLIDERPEEVTDIERSVKADVVSSTFDEVPENHVK
VAELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNLEEGGSLTILATALIDTGSRMDEVIYEEFKGTGNMELHLDRHLAERRVFPALDIR
RSGTRKEELLIPSDQLEKLWAIRKTFSDAPDFAERFLKKLRQTKTNDEFFEVLNEEMKAH
RKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgattacgatatcggcgctggaaaatatgacattgaaagagttatattccctc
gcgaaacaatacaagatttcttactatagcaaattaacaaaaaaagaattgatcttcgcc
atcctgaaatcgagggcggagcaggaaggctatttcttcatggaaggtgttctggagatc
atccagtcggaagggtatggattcctgcggccgatcaactattcgccaagctcggaggat
atttatatttccgcttcgcaaatccgccgctttgacttgcggaacggggataaagtgacc
gggaaagtacgtccgccgaaagaatcggaacgttactacggcttgctccatgtggaagca
gtcaacggcgaagacccggaagtcgctcgggagcgggtacatttcccggccttgacgcca
ctttatccagatcggcatattaagctggaaaccagtccaaccaaactatccacacggatc
atggacttggtatcaccggtcggtttcgggcaacgcggcttgatcgtcgcaccgccgaaa
gccggtaaaacgatgttgttgaaagaaatcgccaactccattacgacgaatcatccggaa
acggaactgatcgtcctgctgatcgacgagcggccggaagaagtgacggatatcgaacga
tccgtcaaagccgatgtcgtcagttcgacgtttgacgaagtgccggaaaaccatgtgaaa
gtggcggagctcgtattggaacgggcaatgcgcctcgtcgagcataagcgtgacgttgtc
atcctgatggactctatcacgcggttggcgcgtgcgtataacctggtcatcccgccaagc
ggacggacgttatccggggggatcgacccagctgcattccatcgcccgaagagatttttc
ggagcggctcgtaatctagaagaaggcggtagtttgacgattttggcaacggccttgatc
gatacgggctcccgtatggacgaagtcatttacgaggaattcaaagggacgggcaacatg
gaacttcatttggaccgtcacttggcagaacgccgggtattcccggcgctcgacatccgc
cgctcgggaacgcggaaagaagagctgctcatcccgtccgaccagctggagaagctctgg
gcaatccgcaagacattctccgatgcgcctgatttcgcagaacgtttcctgaaaaagctg
cgccagacaaaaacgaacgatgagtttttcgaagtgttgaatgaagagatgaaagcgcac
cgaaaaggcaaaggccttctgtaa
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