Bacillus sp. OxB-1: OXB_2096
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Entry
OXB_2096 CDS
T03635
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
baco
Bacillus sp. OxB-1
Pathway
baco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OXB_2096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baco03019
]
OXB_2096
03016 Transfer RNA biogenesis [BR:
baco03016
]
OXB_2096
Enzymes [BR:
baco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OXB_2096
Messenger RNA biogenesis [BR:
baco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OXB_2096
Transfer RNA biogenesis [BR:
baco03016
]
Prokaryotic type
tRNA degradation factors
OXB_2096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
S1_2
LCIB_C_CA
Motif
Other DBs
NCBI-ProteinID:
BAQ10567
UniProt:
A0A0A8JJL4
LinkDB
All DBs
Position
2174716..2176833
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AA seq
705 aa
AA seq
DB search
MTEKKVYTLDWAGRQLTIEAGQLAKQANGAVLVRYGDTSVLSTATASKQPKALDFFPLTV
NYEERLYAVGKIPGGFIKREGRPSEKAVLTSRLIDRPIRPLFADGFRNDVQVISLVMSVD
QDCSSEMAAMIGSSLALSISDIPFEGPIAGVQVGRIDGEFLINPTQAQMEKSDLDLVVAG
TKDAINMVEAGAKEVSEDTILEAIMFGHQEIIRLIEFQEKIVAEIGKDKMEIELFELDET
LSAAIKEQCETELIQAIQTHEKHAREDAINAVKQQVIDRYAEEEADEATMKQVKAILDQM
VKDEVRRLITDEKIRPDGRSLDEIRPLASEVGILPRTHGSGLFTRGQTQALSICTLGALG
EVQIIDGLGLEESKRFMHHYNFPNFSVGETGPIRGPGRREIGHGALGERALEAVVPDESE
FPYTIRLVAEVLESNGSSSQASICASTMAMMDAGVPIKSPVAGIAMGLVKKGENYSVLSD
IQGMEDHLGDMDFKVAGTDKGITALQMDIKIEGLSRQILEEALTQAKAGRLKILDHMMTA
ISAPREELSAYAPKIIMIKINPDKIRDVIGPGGKVINKIIEETHVKIDTEQDGTIYISSP
NNEMNARAKEIIENIVREAKVDEYYMGKVKRIEKFGAFLEIFPGKDGLLHISEIAEERTK
AVEDVLKLGDELMVKVIEIDNQGRVNLSRKVVLKEEKERAEKEKN
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaaaaggtttacacacttgattgggcaggacgacagctgacgattgaagcg
ggccagctggcaaaacaggcaaacggggcagtattggtccgttacggcgatacatcggtc
ctatcgaccgcaacagcttcaaaacaaccgaaagcactggatttctttcctcttactgtg
aactacgaagagcgtttgtatgcagtcgggaaaatcccgggaggtttcatcaaacgggaa
gggcgtccttccgagaaagcggtgttgacgagccgtttaatcgaccgcccgatccgtccc
ttgtttgcggacggcttccggaatgatgtccaggtgatttcgctggtcatgtcggtcgac
caagattgttcgtccgagatggctgctatgatcggctcttccctcgccttgtccatttcc
gatattccatttgaagggccgatcgccggtgtccaagtcggacggattgatggagagttt
ctaatcaacccgacgcaggcacaaatggaaaaaagcgatttggatcttgtcgttgctggg
acgaaggatgccatcaacatggtggaagcaggggcaaaagaggtctcggaagacactatc
ctcgaagcgatcatgttcggtcaccaggagatcattcgcttgatcgaattccaagagaag
atcgtagcggaaatcgggaaggacaagatggaaattgagctgttcgagttggatgaaacc
ttgtctgctgccattaaagaacaatgtgaaacggaattgatccaagcgattcaaacccat
gaaaaacatgcgcgcgaagacgctatcaatgccgtgaaacaacaagtgatcgaccgctat
gccgaagaggaagcggacgaagcgacgatgaaacaagtgaaggcaatcctggatcagatg
gtcaaggacgaagtgcgccgcctcatcacggacgagaagattcgcccggacggccgcagt
cttgatgaaatccgtccacttgcctccgaagtcggcatcttgcctcgtacgcacgggtcg
ggtctcttcacacgcggccagacgcaagcactcagcatttgtacgcttggtgcgcttgga
gaagtccagatcattgacggactcggccttgaggaatcgaagcggttcatgcaccattat
aacttcccgaatttcagtgtcggggaaacagggccgatccgtggaccgggccgccgggaa
atcggacatggagcccttggagagcgtgccttggaagctgtcgttccggatgaatccgaa
ttcccgtacacgatccgcctagttgcagaagtgttggaatcgaacggttcctcctcccaa
gcttcgatttgtgcctccacgatggcgatgatggatgccggagtgccgatcaagtcaccg
gttgcgggaattgcgatgggactcgtgaaaaagggcgagaactattccgtcctctccgac
atccaagggatggaagaccatctcggagacatggacttcaaagtggctggaactgataaa
ggaatcacggcccttcaaatggatatcaaaatcgaaggcttatcccgtcaaattctggaa
gaggcgttgacacaggcaaaagcgggacggctcaaaatattggatcatatgatgactgcc
atctctgcgccgcgtgaagaactttcggcgtatgcaccaaaaatcatcatgattaaaatc
aatccggataaaatccgagacgtgatcggaccgggcggtaaagtgatcaacaagatcatt
gaagaaacccatgtgaaaattgatacggaacaagacggtacgatctatatttcctcgccg
aacaacgaaatgaatgcgagagcgaaggaaatcatcgagaacatcgtccgggaagcaaaa
gtcgatgagtattacatggggaaagtgaaacggattgaaaaattcggtgccttcctcgaa
atcttcccaggaaaagatggacttctccatatttccgaaattgcggaagaacggacgaaa
gcggtggaagacgtgctgaaactcggtgatgagctcatggtcaaagtgattgaaatcgac
aatcaaggccgtgtcaacttgtcacgcaaagtcgtcctgaaagaagaaaaggaacgcgca
gaaaaagagaaaaactaa
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