KEGG   Bacillus sp. OxB-1: OXB_2129
Entry
OXB_2129          CDS       T03635                                 
Name
(GenBank) RNA-binding protein hfq
  KO
K03666  host factor-I protein
Organism
baco  Bacillus sp. OxB-1
Pathway
baco02024  Quorum sensing
baco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:baco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OXB_2129
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OXB_2129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:baco03019]
    OXB_2129
   03036 Chromosome and associated proteins [BR:baco03036]
    OXB_2129
Messenger RNA biogenesis [BR:baco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OXB_2129
Chromosome and associated proteins [BR:baco03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OXB_2129
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: BAQ10600
LinkDB
Position
2215220..2215444
AA seq 74 aa
MAQGNMQDVFLNSLRKNNTFVTVFLLNGFQLKGLIKSYDNYTVLLESDGKQQLIYKHAIS
TYVPSKPVVLKEDE
NT seq 225 nt   +upstreamnt  +downstreamnt
atggcgcaagggaatatgcaggatgtttttttaaattcgttacggaaaaacaatacattt
gtaacggtattcttactgaatggatttcaattgaagggcctaatcaagtcatatgataat
tacacggtcctgcttgaatcggacggaaaacagcaattgatctacaaacatgcgatttct
acatacgtcccatccaaaccggtcgtattgaaagaagatgaataa

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