Bacillus sp. OxB-1: OXB_3079
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Entry
OXB_3079 CDS
T03635
Name
(GenBank) single-stranded-DNA-specific exonuclease recj
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
baco
Bacillus sp. OxB-1
Pathway
baco03410
Base excision repair
baco03430
Mismatch repair
baco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
baco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OXB_3079
03430 Mismatch repair
OXB_3079
03440 Homologous recombination
OXB_3079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baco03400
]
OXB_3079
DNA repair and recombination proteins [BR:
baco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OXB_3079
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OXB_3079
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OXB_3079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAQ11549
LinkDB
All DBs
Position
complement(3073581..3075914)
Genome browser
AA seq
777 aa
AA seq
DB search
MIESKKRWTISRPDDEIVKTLQSTLGIPSVHAKILAARGITDPTEAKAFLHMDETCLHDP
FLFHDMDKAVKIIGRAISEQKKIVVYGDYDADGVTSVSVLTTALERLGADVFFAIPDRFK
HGYGPNRELFEELHEQGASLIITVDNGISGIGQIAHAKSLGMDVIITDHHEIGETMPAAD
AVIHPRHPEGSYPFGELAGVGVAFKLACALLGEIPHDLIELVAIGTVADLVPLRDENRYL
VKEGIRRMRRSTRPAIQALARVAGAEQAGLNEESIGFTIGPRINAAGRLGDAKPAVDLLK
TDDEGVAMALAEQLDSLNKERQAIVSNITKEAERMISDTYGDKIPYVFVIAGEGWNPGVV
GIVASRLTEKYHRPSIVLSLDSEAGTAKGSARSISGFDLFGELSKNTNLLPHFGGHQMAA
GMSLAIEDIDDLRQNLNAQAAEVLTEQMLIPEKVIDVPLKLEEINVDVLESLEILRPFGM
SFEKPAYMIEKLTTATVRQIGADKNHLKLELQDGEWKLDAIGFRFGHMADHMTPDITLSL
VGDLQVNEWNGHKKPQLLIEDVRSDDWQLFDLRGIREPSRWLPKIPLKHTLFVAFRDRTI
SRLPSTMQGISVLHYGKDQLKEAENVVLLDMPNAKTELEHVIQTIVPDRIYAHLHEPESK
YFDGIPGRDQFGWFYTFLKKRGSFDMNQNADLLTKHMGWKKDTVYFMSQVFSELGFVKIE
NGVASVVETADKRDLAEAPSYRQRQRQIELEKRLLYASYFELKQWFETIRNGIDREE
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaatcaaagaaaagatggacgattagtaggccggatgacgagattgtcaaaacg
ctgcaatcgactctcggtattccatctgtccacgccaaaatcctggctgcccgtgggatt
acagacccgaccgaggcgaaagcttttttacatatggatgaaacttgcttgcatgacccg
tttttatttcacgatatggacaaagcggtcaagatcatcggccgtgccatttccgaacag
aagaagattgtcgtctatggggactatgatgcggatggcgtgacgagtgtctccgtcttg
acgacggcattggaacgactgggggcagatgtcttcttcgccattccagaccgctttaaa
cacggctacgggccgaatcgggagctgttcgaggaattgcatgagcaaggggcatcgctc
attatcacagtcgataacggaatttccggaatcggtcagatcgcccatgccaaatcgctc
ggtatggacgtgatcatcaccgaccaccatgaaatcggggaaacgatgccggcagcggat
gctgtcatccatccccggcacccggaaggctcctatccgttcggtgaattggccggcgtc
ggggtggcgttcaaattggcctgtgccttgctcggcgaaatcccacatgacttgatcgag
cttgtcgcaatcggcacggtggccgacctggtgccgcttcgggacgaaaaccgctatttg
gtcaaagaggggatccgtcgcatgcgccgctccacacgtccggccatccaggcgcttgcc
cgtgtggcaggtgcggagcaagccgggttgaatgaagaatcgatcggtttcacgatcggc
cctcgaatcaatgcggcaggacgcttgggcgatgcaaaacccgctgtcgatcttctgaaa
acggacgatgagggggttgccatggcattggccgagcaactggactcgttgaacaaagaa
aggcaagccatcgtttcgaatatcacaaaggaagcggagcggatgatctccgacacctac
ggggacaagatcccatacgtattcgtcatagcgggcgagggatggaatccgggtgtcgtc
ggaatcgtcgccagccggttgacggagaaatatcatcggccttccatcgtcctttcattg
gattcggaagcgggcacggcaaaagggtcggcccgcagtatttcgggattcgacttgttc
ggggaactgtcaaaaaatacgaatctactgccgcatttcggaggccatcaaatggcggcc
ggcatgtccctggcgatcgaagatatcgacgacctgcgccaaaatttgaatgcccaagcg
gcggaagttctgacggaacagatgttgattcccgaaaaagtgatcgatgtcccgttaaag
ttggaagagatcaatgtggatgtgctggaatcgcttgaaatcctccgacctttcggaatg
agtttcgaaaagccggcttatatgatcgaaaagttgacgactgcaaccgtacggcaaatc
ggggcggataaaaaccatttgaagctggaactgcaggatggggagtggaagctggacgcg
atcggtttccggtttggccatatggcggatcatatgacaccggacatcacgttgtccctc
gtcggtgacttgcaggtgaatgaatggaacggccataaaaagccgcagttgttgatcgaa
gacgtccgttcggatgactggcagttattcgatttgcgcggcatccgggaaccgtcccgt
tggcttccgaaaattccgctgaagcataccttatttgtcgcgttccgggatcggaccatt
tcccgcctcccgtctacgatgcaaggaatttccgtccttcattatgggaaagatcaatta
aaggaagcggaaaatgttgtcttgctcgatatgccgaatgccaagacggaattggaacat
gtcatccagacgattgtgcccgaccggatctatgcccatctgcatgagcctgaatcgaag
tatttcgacgggattccgggccgtgatcagttcggatggttttacacctttttgaaaaaa
cggggcagtttcgatatgaaccaaaacgcggatctgctgaccaaacatatgggttggaaa
aaggatacggtttatttcatgtctcaggtgttttccgagcttggatttgttaagatagag
aatggcgtggcttccgtcgtggaaactgccgacaagcgggatttagcggaagcgccgtct
tatcgacagagacaacggcaaatcgaattggaaaaaagattgctttatgcatcctatttc
gagttgaagcaatggttcgagacgatccggaatgggatcgacagggaggaataa
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