Bacillus sp. Y1: DOE78_07315
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Entry
DOE78_07315 CDS
T05922
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bacq
Bacillus sp. Y1
Pathway
bacq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DOE78_07315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacq03019
]
DOE78_07315
Messenger RNA biogenesis [BR:
bacq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DOE78_07315
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
AYA75251
LinkDB
All DBs
Position
complement(1484871..1486538)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNVDKIKGLFVTHGHEDHIGGIPYLLREVNIPIYGGKLALGLIKNKLEEHGLLRTAKLI
EIKEDDIIKFRKTSVTFFRTTHSIPDSYGIVVKTPPGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKDGVLCLLSDSTNSEVPDFTMSERRVGESIQDIFRKVEGRVIFATFASNIHRLQQ
VTEAAVAHGRKIAVFGRSMEAAIRIGQELGYIRAPKDTFIESQQINRIPANQLTILCTGS
QGEPMAALSRIANGTHRQIQINPGDTVVFSSSPIPGNTVSVSRTINMLFRAGADVIHGSL
NDIHTSGHGGQQEQKLMLRLIKPKFFMPIHGEYRMQKMHAKLAVDCGVEEENCFIMDNGE
VLALSEDTAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVVVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLINDAQSLISKHLNKVMERKTTQWSEIKNEITDTLSPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgttaaaaatgatcaaacggccgtgttcgcccttggcggccttggggaaatc
ggaaagaatacgtatgcagttcaattccaagatgaaattatcttgattgatgccggtatt
aagtttccagaggacgagctacttggaattgactacgttattcctgattacacttaccta
gtgaaaaatgtggacaaaattaaaggcctttttgttacacatggtcatgaggatcatatt
ggtgggattccttatttattaagagaagtaaatattcctatttacggcggaaaacttgca
cttggcttaattaaaaataagcttgaagaacacggattacttcgcacggctaaattaatc
gagattaaagaagatgacatcatcaagttcagaaagacatcggttactttctttcgaact
acccatagtattccggattcatatggaatagtagtgaaaacacctcctggacaaatcgtc
cacactggagatttcaaattcgatttcactccagtcggggaacctgctaatttaacaaaa
atggcagaaatcggtaaagatggcgtactttgtttgttgtctgatagtacaaacagcgaa
gtccctgatttcaccatgtctgagcgacgtgttggtgaaagcatccaggatatttttaga
aaggtagaagggcgcgttatttttgctacctttgcatctaatatccaccgccttcaacaa
gtaacagaagctgctgtagcacacggtagaaaaattgctgtattcggtagaagtatggaa
gcagccatccgcattggacaagaattaggttatattcgtgcaccgaaagatacatttatt
gagtcacaacaaattaatcgaattccagctaatcaattaacgattctatgtacaggaagt
caaggcgagcctatggcagctctttctcgtattgccaatggaactcatcgtcaaattcaa
attaaccctggagacacagttgtattctcatcttcaccaattccaggaaacacggttagt
gtaagtcgtacaatcaacatgctgttccgcgcgggagcagatgttattcatggatcatta
aatgatattcacacttctggtcacggtggacaacaggaacaaaagcttatgctacgactg
attaagcctaagttcttcatgccgatccatggggaatatcgcatgcaaaaaatgcacgcc
aaacttgcagtggattgtggcgtagaagaagaaaactgctttattatggataatggtgag
gttctagctttaagcgaagatactgcacaggttgctggaaagattccatctggaaatgtt
tatatcgatggaagcggaatcggcgacattggtaatatcgttttaagagaccgtcgtatc
ctctctgaagaaggactagtcgttgttgtagtaagcattaatatgaaggactttaaaatt
gctgctggtcctgatatcatctctcgcgggtttgtgtatatgagagagtccggtgacctg
attaacgatgctcaatcactaatttctaagcacttaaataaagtgatggaaagaaagaca
acacaatggtcggaaattaaaaatgaaattaccgacactttatctcctttcctatatgaa
aaaacaaaacgtcgtccaatgatcctaccgatcattatggaggtatag
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