KEGG   Bacillus sp. Y1: DOE78_23555
Entry
DOE78_23555       CDS       T05922                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
bacq  Bacillus sp. Y1
Pathway
bacq03030  DNA replication
bacq03430  Mismatch repair
bacq03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bacq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DOE78_23555
   03430 Mismatch repair
    DOE78_23555
   03440 Homologous recombination
    DOE78_23555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bacq03032]
    DOE78_23555
   03400 DNA repair and recombination proteins [BR:bacq03400]
    DOE78_23555
Enzymes [BR:bacq01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DOE78_23555
DNA replication proteins [BR:bacq03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DOE78_23555
DNA repair and recombination proteins [BR:bacq03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DOE78_23555
SSDB
Motif
Pfam: RNase_T Rv2179c-like DEDDh_C DNA_pol_B_exo1
Other DBs
NCBI-ProteinID: AYA78136
LinkDB
Position
complement(4786676..4787341)
AA seq 221 aa
MFFLRKSITCPLLYQEIPLSTPLDELKFVVFDTETTGFEIATSDRLIEIGAVLIEGFKVC
EASSFQTYVNPSRQISREITELTSISNEQVTGAPYAFEAISDFFSYVREQETVSLVGHYV
SFDTLVLKNELKREKIGLKGTFTIDTLDLIGFLAPSYDMRDLERYARAFGTRIYERHNAV
GDAKTTAYLFVELIQQFRDRGYCTWGELVKATESQARFLQL
NT seq 666 nt   +upstreamnt  +downstreamnt
atgttttttctacgaaaatcaatcacctgcccgcttctatatcaggaaataccgttatcc
actccactagatgagctgaaatttgtcgtttttgacacggaaacgacagggttcgaaata
gctacatcggacagattgatagagattggggccgttttaatagaaggttttaaggtttgt
gaggcttctagctttcaaacctatgtgaatccatctcgacaaatttctcgggaaataacg
gaattgacgtctatttctaatgaacaagtgactggagctccatatgcatttgaggccatt
tctgatttcttttcgtatgtgagagagcaggaaactgtgagtctggtcgggcattatgta
agctttgatacgcttgtgttaaaaaatgaattgaaacgagaaaagatcgggctaaagggg
acttttacaattgatacacttgatcttattggtttcctcgctccatcgtatgatatgcgc
gacctcgaacgatacgcgcgtgcgtttggaacaagaatttatgagcggcataacgcggta
ggtgatgcgaagacaacagcgtatttatttgtggagcttatccagcaatttcgcgatcgc
ggctattgtacgtggggggagcttgtgaaggcaacagagagtcaagctcggttcttacag
ctgtaa

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