Bifidobacterium actinocoloniiforme: AB656_00875
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Entry
AB656_00875 CDS
T04036
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bact
Bifidobacterium actinocoloniiforme
Pathway
bact03030
DNA replication
bact03430
Mismatch repair
bact03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bact00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AB656_00875
03430 Mismatch repair
AB656_00875
03440 Homologous recombination
AB656_00875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bact03032
]
AB656_00875
03400 DNA repair and recombination proteins [BR:
bact03400
]
AB656_00875
Enzymes [BR:
bact01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AB656_00875
DNA replication proteins [BR:
bact03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AB656_00875
DNA repair and recombination proteins [BR:
bact03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AB656_00875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF5487
Motif
Other DBs
NCBI-ProteinID:
AKV55056
UniProt:
A0A086YZQ0
LinkDB
All DBs
Position
246922..250485
Genome browser
AA seq
1187 aa
AA seq
DB search
MASTVAPDSFIHLHNHTHYSTLDGASKVPELVQQVKAMGQKAIAITDHGNMHGAYELWRN
AVDNDIKPIIGIEAYVTPETARQDKTRVHWGDETQRSDDVSGGGYITHMTMWAESDTGLV
NLIKASSVANLEGLVGKWPRMDKEVLSTYSKGVIATTGCPSGIVQTRLRLGQYDEALRAA
GEFQDIFGKDNYYVELMDHGLEIEKRVTKDLLRIAKSIGAPVVATNDAHYVKEEDAGAQD
ALLCINSGAHLDEPGRFKFDGSGYYIRSAREMRDLFKEFPQACDNTLEIAERCNVMFDDH
EDGAFMPRFDCPEGWDETSLFLKQVDEGLKKRYPGGVPAEVSKQADYECGVICQMQFCGY
FLVVSDYINWAKEHGIMVGPGRGSAAGSMVAYAMGITELDPLRHGLIFERFLNPERVSLP
DIDVDFDPEGRMKVLEYVADKYGSDKVAQCVTYGTIKTKNALKDSARIMGYEYSMGDKVT
KALPPSANGKDMSLKDIFDPGSKRYPEAREFRELYDSDPDVHRITDEAKGLEGIIRQTGV
HACATIMGAEPITNTSPLMERNDGTVTTTFEYHTCETLGLVKMDFLGLSNLSVIRDCLNN
IARNGKEPISYQEIPLDDKETYELLSRGDTLGVFQLDGDGMRSLLRLLKPDNFNDISALI
ALYRPGPMDMDSHINYAKRKNGQQKIEPIHPEVAEPLKEVLDETYGLIVYQEQVQSAARI
LAGYSLGRADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSEEAAQAVWDILVPFSGYAF
NKAHSAAYALIAYWTAYLKTHYPVEFMAALLQGERSNKDKTALYLGEARRMGIKVLPPDI
NESVSEYSAVGDVVRFGLGAIRNVGDKAVKEIISEREGKRGKFVNFLDFVKRVSMEALNK
RTVESLIKAGAFDETDGNRRALFQIHEVAIDQVVPLKRKQAEGQFDLFADEEDTSEADIL
GDADVSVPDIEEWDKKTKLNFEREMLGLYVSDHPLSGMASVLAGLRDMSIAQLVDRASTL
GENQSVAIAGLITSVDRRVSKRGNPWARVTIEDLESSIVCNFFGKSYEKASEDLALDTVI
RVRGQVEIRDDGVSMRALDVEVPTLEAADERPLVITLPQGAIDRGRMQRLARIIKDHPGY
CQVQLAVCDAKGNVKLFTFGDDFRSKHDTSMLAEIKTVFGPSCLPAA
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacagttgctccggacagtttcatccacctgcacaaccacacgcactactcc
actttggacggtgcctcgaaggtgcctgagctggtgcaacaggtcaaggccatggggcag
aaggccatagcgattaccgaccacggcaacatgcacggcgcttacgaactctggcggaac
gcggtggacaacgacatcaaaccgattatcggcatcgaggcctacgtgacccccgagacc
gcgaggcaggacaagacccgcgtgcattggggcgatgagacccagcgctcggacgacgtg
tccggtggcggctacatcacccacatgaccatgtgggccgaatccgacaccggtttggtc
aacctgatcaaggcgtcatcggtagccaatctggaaggcctggtcggcaagtggccccgc
atggacaaggaagtgctctccacctactccaagggcgtcatcgccacgaccggctgcccc
tccggtatcgtgcagacccgcctgcgtttgggccagtacgacgaggctcttcgggcggcg
ggggagttccaggatatcttcggcaaggacaactactacgtggagctgatggaccacggc
ctggagatcgagaagcgggtgaccaaggacctgctgaggatcgcgaaatccatcggcgcc
cctgtggtggccaccaatgacgcccactacgtcaaggaggaggacgcgggcgcgcaggac
gcgctcctttgcatcaactccggcgcccacctggacgagccagggcgcttcaagttcgac
ggatcgggctactacatacgctcagcccgggagatgcgcgacctcttcaaggaattcccc
caggcttgcgacaatacgttggaaatcgccgaacgctgcaatgtgatgttcgacgaccac
gaggacggggccttcatgccccggttcgactgccctgagggctgggacgagacctcgctc
ttcctcaagcaggtggatgagggcctgaagaagcgctatccgggcggggtgcccgccgaa
gtctccaagcaggccgactacgagtgcggcgtcatctgccaaatgcagttctgcggctac
ttcctggtggtctccgattacatcaattgggccaaggagcacgggatcatggtgggcccg
gggcgcggttcggcggcaggctcgatggtggcctacgcgatgggcatcaccgagttggac
cccctgcggcacggtctgattttcgagcgcttcctgaacccggagcgcgtctccctgcct
gatatcgatgtggatttcgaccccgaaggccgcatgaaagtgctggagtacgtggccgac
aagtacggttccgacaaggttgcccagtgcgtgacttacggcacgatcaagaccaagaac
gccttgaaggactcggcgcgcatcatgggctacgagtactcgatgggcgacaaggtgacc
aaggccctgccgccttcggccaacggcaaggacatgagtctcaaggacatcttcgaccct
ggctccaaacgttacccggaggcgcgcgagttccgcgagctctacgactcggacccggac
gtgcaccggatcaccgacgaagccaagggcttggaaggcatcatccgccagaccggcgtg
cacgcctgcgccacgatcatgggcgccgaaccgatcaccaacacttcgccgctcatggaa
cgcaacgacggcaccgtgaccaccaccttcgagtaccacacctgcgagaccctgggcctg
gtcaagatggacttcctggggctgtccaacttgagcgtgatccgcgactgcctgaacaac
atcgcgcgcaacgggaaggagcccatctcctaccaggagatcccgttggatgacaaggag
acttacgagctgctctccagaggcgacaccctgggcgtcttccagctcgatggcgacggc
atgcgctccctcctgcggctcctgaagcccgataacttcaacgacatctccgccctgatc
gccctctaccgaccgggccctatggatatggattcgcatatcaactacgccaagcgcaag
aacggccagcagaagatcgagcccatccacccggaggtggccgagccgctgaaggaggtc
ctggacgagacctacggcctgatcgtctaccaggagcaggtgcagtccgcggcccgcatc
ctggccggctactccttgggtcgggccgacgtgctgcgccgggccatgggcaagaagaaa
cccgaggtcttggccaaggagcaggtgcccttcttcgagggcatgaaggagcacggctac
tccgaggaggccgcccaagcggtttgggacatcctggttcccttctccggctacgcgttc
aacaaggcccactccgccgcctacgccttgatcgcgtattggacagcctatctgaagacc
cactacccggtggagttcatggcagcccttctccagggcgagcgcagcaacaaggacaag
accgccctctacctgggcgaggcccgacgcatgggcatcaaggtcctgccgccggacatc
aacgagtcggtttccgagtactccgccgtcggcgacgtggtgcgcttcggcttgggcgcc
atccgtaacgtgggcgacaaggccgtcaaggagatcatcagcgagcgtgagggtaagcgg
ggcaagttcgtcaatttcctggacttcgtcaagcgggtctcgatggaggcgctcaacaag
cgcacggtcgaatccctgatcaaggccggcgctttcgacgagaccgacggcaaccgccgg
gccctcttccagattcatgaggtggccatcgatcaggtggtgccgctcaagcgcaagcag
gccgaagggcagtttgacctgttcgctgacgaggaggacacgtccgaggccgacatcctg
ggcgacgcggatgtctccgtacctgacatcgaggagtgggacaagaagaccaagctcaac
ttcgagcgtgagatgctgggcctgtatgtgtccgaccatcccctgtccggcatggcttcg
gtgctggccgggttgcgggacatgtcgatcgcccagctggtggaccgggcctcgaccctg
ggcgaaaaccagagcgtggccatagcagggttgatcacttcggtggatcggcgcgtatcc
aagcggggcaacccctgggcgcgcgtcacgattgaggatttggagagctcgatcgtctgc
aacttcttcggcaaatcctacgaaaaggccagtgaggacttggcgctggatacggtgata
cgcgtgcgcggccaggttgagatccgcgatgatggggtgagcatgcgggccttggacgtg
gaggtgccgaccctggaggcggcggacgagcggccgctcgtgatcaccctgccccagggg
gcgatcgaccgtgggcggatgcagcggctggcgcgcatcatcaaggaccatcctggctac
tgccaggtgcaactggccgtgtgtgacgccaagggcaacgtcaaactcttcaccttcggc
gacgacttccgcagcaagcacgacacgtcgatgctggcggagatcaagaccgtgttcggc
ccttcctgcctgccggccgcatga
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