Bifidobacterium actinocoloniiforme: AB656_00895
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Entry
AB656_00895 CDS
T04036
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bact
Bifidobacterium actinocoloniiforme
Brite
KEGG Orthology (KO) [BR:
bact00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bact03019
]
AB656_00895
Enzymes [BR:
bact01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AB656_00895
Messenger RNA biogenesis [BR:
bact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AB656_00895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
HA2_C
AAA_11
nSTAND3
AAA_30
T2SSE
SLFN-g3_helicase
Zeta_toxin
ResIII
NACHT
SRP54
Cas3-like_C_2
AAA_16
HA2_N
TsaE
Motif
Other DBs
NCBI-ProteinID:
AKV55058
UniProt:
A0A086YZQ4
LinkDB
All DBs
Position
complement(253739..257848)
Genome browser
AA seq
1369 aa
AA seq
DB search
MKFTYPSELPVSASRDRIEQAIKSSQVVIVSGQTGSGKTTQIPKILLQMGRGSHGHQIVH
TQPRRIAARTVAERIADELGVKLGDEVGYQVRFEDESSRSTRLRVVTDGILLAQIQRDPK
LSAYDTIVIDEAHERSLNIDFLLGYLTALLPQRRDLKLVITSATIDSVKFQEHFAKALHT
KVPVIEVSGRTYPVQTVYEPLGAPPALMSQVPGFAAPRVAPDSGDPLETAEADLPGAVAR
ACAELVILSSHATGPRDILVFAAGEHDIHEYEAALRRHWGPRASDQRRPDAIEILPLYAR
LSAKEQHRAFQPHTHQRIIIATNVAETSLTVPGIRYVVDPGLARISRYSKSAKVQRLPIE
PISQASADQRAGRCGRVADGIAIRLYSREDYESRPRFTDPEILRTSLGAVVLHMLSVGVA
HTAQDVTGFGFIDPPDVKAVSDGFNELTELGAIDRDHGRIRLNRLGRRLSRIPIDIRLGR
MILQADREATPNTLAAVIVVVAFLSLQDPRERPEDKRDEADRLHARFQDPSSDFVTVLNL
WEHCFPDGKASSSTLRRLSKNEFLSFPRLRQWHDLYRQLDQTCQDMRMKVGQPRPASGPK
SEALALPLAQQGRGSLACSWDGEGLHRCMLSGLLSSLGMQVVTEPKASQFAGLKGAARAK
AIKRAQKRSRNEYRGARGTRFAIFPSSALAKTPPPWIMAAGLVETSRLWARYCAAVDPAW
AESLAGDLTRVTYAEPHWSATKGAAVASSTVLLYGLPIVSGRPVLWGSINPSEARDFLIR
QGLVEGDIRERFSYDDFIEGNRRVLQEEGEQASKTRLVAQSATDEDLYDFYNERLPQEAT
SLAALAKWWKGARAKDPDMLTFDPTQVERLRQGESSARPGDYPDHWHTVGTDGSPIDLRL
SYVYDPQSPEDGVTLHVPLAALGQLTPEQFTWNVPGLLDELIVATIKSLPKALRRQFVPA
PDTARAIRAWIDERYPRLPGSAPLDPAQEPPTESDAKPIAAPWPPFDQVFTQAAIDVVGA
QVHPQVFSPEQLDRLPPYLRMTFAVEEPTQTGRGGHGNHDRHGRRPGQRSGAPQGKVLGR
SKSLGDLQRRFAEPARRSAQARVSTQARKAARQGQVVKRADLLQRSGATTIPRSDMLWQG
ALKTLKLPDERISSRWLSREALMLAAAPYPSTKALVDDLQLAAVKRLLPRVADLPDDQAL
TEAVYKISGVFEDTVYRLAQDIIVILQRYAEVDKAVSGPADLPMLSVLQWIRDHAASLVH
TGFIGAAPPQALPSFERYLHADLIRLTKARVDKDRDVRWAWQADEAKQLVDKARARADGL
PAGPRREEMAEQTDRARWMLEDFYVSLWAQELGAPRPVSIQRIRKALEA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcacctaccccagcgaactaccggtctcagcctcgcgcgatcgtattgagcag
gccatcaaatccagtcaggtggtcatcgtctccggtcagaccggttcgggaaagaccacg
cagattcccaaaatcctcctccaaatgggccgaggctcccacggtcaccaaatcgtgcac
acccagccccgacgcatcgcggcgcgcaccgtggccgagcgcatcgccgacgagctgggc
gtcaaactcggcgacgaggtgggctaccaagtgcgcttcgaggacgaatcctcgcgctcc
acccgcctgcgagtggtgaccgacggcatcctgctggcccagattcagcgcgaccccaag
ctgagcgcatacgacaccatcgtcatcgacgaggcgcacgagcgcagcctgaacatcgac
ttcctgctgggttacctgaccgcgttgctcccccaacgccgcgatttaaagctggtcatc
acctcggccaccatcgattcggtcaagttccaggagcacttcgccaaggccctgcacacc
aaagtgccggtcatcgaggtctccgggcgcacgtaccccgtccagaccgtctacgagccc
ctgggcgccccgccggccctcatgagccaagtacccggcttcgcggccccacgggtggcc
ccggactccggcgaccccctagagacggcagaagccgaccttccgggggcggtggcccgg
gcttgcgccgagctcgtcatcctttccagccacgccaccggccccagggatatcctggtc
ttcgccgccggcgagcacgacatccacgagtacgaggccgccctgcgccgccactggggc
ccgcgcgcctcagaccagcgccgacccgacgcgatagagatcctgcccttgtacgcccga
ctgtccgccaaggagcagcaccgcgccttccagccccacacccaccagcgcatcatcatc
gccaccaatgtggccgagacctcgttgaccgtgccaggcatccgctacgtggtggaccca
ggcctggcccgcatctcgcgctattccaagtcagccaaggtccagcgcttgccgatcgag
ccgatctcccaggcttcagccgaccagagggcgggccgctgcggacgagtggccgacggc
atcgccatccgcctctactcgcgcgaagactacgaatcccgcccacgcttcaccgaccct
gaaatcctgcgcacctccctgggcgccgtcgtcctgcacatgctttcagtcggcgtagcg
cacacggcccaggatgtgaccggtttcggcttcatcgacccaccggacgtcaaggcggtc
tccgacggcttcaacgagctgaccgaactcggcgccatcgaccgcgaccatgggcgcatc
aggctgaaccggctgggccgcaggctctcccgcatcccaatcgacatccgcctgggccgc
atgatccttcaagccgaccgtgaggccacacccaacacgctggccgcggtcatcgtggtc
gtcgccttcctgagcctgcaggacccgcgtgagcgacccgaggacaaacgcgacgaagcc
gaccgcctccacgcccgcttccaggacccttcctcggacttcgtgaccgtgctgaacctc
tgggagcactgcttcccagacggcaaggcctcctcctctaccctgcgccgcctttccaag
aacgagttcctgagcttcccccgcttgcgccagtggcacgacctgtaccggcagctggac
cagacctgccaggacatgcgcatgaaggtgggccagccccgaccggcttccggccctaag
agcgaggcccttgccctgcccttggcccagcaggggcggggatcgctggcctgctcctgg
gacggagaaggcctccaccgctgcatgttgtccggccttctttcaagcctggggatgcag
gtggtgaccgagcccaaggcctcccaattcgccggcttgaaaggcgcggcccgggccaag
gccatcaagcgggcccagaagcgctcgcgcaacgagtaccgaggggcgcgcggcacccgt
ttcgcgattttcccctcatccgccctggcgaagacccctccaccttggatcatggcagca
ggcctggtggagacctcccgcctatgggcacgctactgcgccgccgtggacccagcctgg
gccgagtccttggccggcgacttgactcgcgtcacctacgccgaaccccactggtccgcc
accaagggggccgctgtggcctcctcgacggtcctgctctacggcctgccgatcgtatcg
ggccggccggtcctgtggggttcgatcaacccttcggaggctcgggacttcttgatccgc
caaggcctcgtggaaggcgacatccgcgagcgcttctcctacgacgacttcatcgagggc
aaccgtcgcgtcctgcaagaggagggcgaacaagcctccaagacccgcctggtcgcccaa
agcgccaccgatgaggacctttacgacttttataatgagcgcctcccgcaggaagccact
tccctggccgccctggccaagtggtggaagggcgctcgagccaaggacccggatatgctg
acattcgacccgacccaggtcgagcgtctgcgtcagggcgaatcctcggcccgcccgggc
gactacccggaccactggcacacggtgggcaccgatggctccccgattgacctgcgtctg
tcgtatgtctacgacccccagtcccctgaggacggggtcaccctgcacgtgccgctggcc
gccctgggccagctgacccctgaacagttcacgtggaacgtgcctggcctcctggatgag
ctgattgtggccaccatcaaatccctgcccaaggccctgcgccgccagttcgtgcccgcc
ccggacacagcccgggccatccgcgcctggattgacgagcgctacccacgcctgccgggc
agcgcgcctttggacccggcccaggagccgcccactgaatccgacgccaagcccatcgcc
gctccctggccacccttcgatcaggtgttcacccaggccgcgatcgatgtggtcggcgcc
caggtccacccccaggtcttctcgcccgagcagctggaccgcctgcccccatacctacgc
atgaccttcgcggtcgaggagccgacgcaaaccggccgtggcgggcatggcaaccatgac
cgccacggtcggcgcccagggcagcgctccggcgcccctcagggcaaggtcctcggtcgc
tctaagtccctgggcgacctccagcgccgcttcgccgaacccgcgcggcggtctgcccag
gcccgggtctccactcaggcccgcaaggctgcccggcaggggcaggtggtcaagcgcgcc
gacctgctccaacgttccggtgccaccaccatcccccgttccgacatgctctggcaaggg
gccctgaagaccctgaagcttcctgacgagcggatttcctcgcgttggctgagccgtgag
gccctgatgctggcggccgccccctacccgtcaaccaaggccctggtcgatgacctgcaa
ctggctgcggtaaagcgccttctgccacgtgtggcggacttgcccgacgaccaagcgctc
accgaggcggtctacaagatctccggcgttttcgaggacacggtctatcgcctggcccaa
gacatcatcgtcatcctccagcgctacgccgaggtggacaaagcggtctccgggcccgcc
gacctgcccatgctctcggtcctgcaatggatccgcgaccatgccgcctccctggtgcac
accggcttcatcggcgccgcacccccgcaagcgctgccctccttcgagcggtacttgcac
gccgacctgattcgcctgaccaaggcccgggtcgataaggaccgcgatgtacgctgggcc
tggcaggcggatgaggccaagcagctagtcgataaggcacgcgcccgggcggatgggcta
cccgccggccctcgacgcgaggagatggcggagcagaccgaccgcgcccgttggatgttg
gaggacttctacgtatccctgtgggcccaggagcttggcgcccctcgcccggtcagcatc
cagcgcattcgcaaagcattggaggcttga
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