Balaenoptera acutorostrata scammoni (minke whale): 103004769
Help
Entry
103004769 CDS
T03086
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
KO
K13126
polyadenylate-binding protein
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03015
mRNA surveillance pathway
bacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103004769 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
103004769 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacu03019
]
103004769 (PABPC1)
03041 Spliceosome [BR:
bacu03041
]
103004769 (PABPC1)
Messenger RNA biogenesis [BR:
bacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103004769 (PABPC1)
mRNA cycle factors
Stress granule specific factors
103004769 (PABPC1)
Spliceosome [BR:
bacu03041
]
Complex C
Other components
Complex C specific factors
103004769 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_10
RRM_occluded
RBD_RDR6
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
103004769
NCBI-ProteinID:
XP_007173469
LinkDB
All DBs
Position
Un
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYGNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
ACYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctacacccc
gacgtgaccgaggcgatgctctatgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctctttgggctacgcgtatgggaacttccag
cagccggcagacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcattatgtggtctcagcgtgatccatcacttcgcaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggttat
ggatttgtgcattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaggaacgagaa
gcagaactcggagctagggcaaaagagttcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgcctgaaggatctctttggcaagttcggacctgccttaagtgtg
aaagtaatgaccgatgagagtggaaaatccaaaggttttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaacggaaaggagctcaatggaaaacaa
atttacgttggtcgagcccagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagagttttctccgtttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaagggtttggatttgtgtgtttc
tcctccccagaagaagccactaaagcagttacagaaatgaatggtagaattgtggccacc
aagccattgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagagaatggcaagtgtaagagctgtgcccaaccctgtaatcaacccctat
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatgctatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtaccatgagaccagcttcttcacaggttccacgagtcatgtcgacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcccgcagctgctgcagctgca
gctactcctgctgttcgcaccgttccacagtataaatatgctgcgggagttcgcaatcct
caacaacatcttaacgcacagccacaagttaccatgcagcagcctgctgttcatgtacaa
ggtcaggagcctttgactgcttccatgttggcatctgcccctcctcaagaacagaagcaa
atgttgggtgaacggctctttcctctaattcaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagattgataattcagaacttcttcatatgcttgagtctcca
gagtctctccgttctaaagttgatgaagctgtagctgtactacaagcccaccaagcaaaa
gaggctgcccagaaagcagtgaacagtgccactggggttccaactgtttaa
DBGET
integrated database retrieval system
