Balaenoptera acutorostrata scammoni (minke whale): 103006939
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Entry
103006939 CDS
T03086
Symbol
COL18A1
Name
(RefSeq) collagen type XVIII alpha 1 chain
KO
K06823
collagen type XVIII alpha
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
103006939 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bacu04147
]
103006939 (COL18A1)
00535 Proteoglycans [BR:
bacu00535
]
103006939 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
bacu00536
]
103006939 (COL18A1)
Exosome [BR:
bacu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
103006939 (COL18A1)
Proteoglycans [BR:
bacu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
103006939 (COL18A1)
Glycosaminoglycan binding proteins [BR:
bacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103006939 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF959
Endostatin
Collagen_trimer
Fz
Motif
Other DBs
NCBI-GeneID:
103006939
NCBI-ProteinID:
XP_007172790
UniProt:
A0A383ZC77
LinkDB
All DBs
Position
Un
AA seq
1597 aa
AA seq
DB search
MAPDPRGRRCHCCLLLLLACCLAPARADLMSWLWPGNAAVSTVAPASTPPGSSPVRPTED
ITTHVAPQDDPTQQWKALASPEPPLERPEVGQGQAPTVPSAASSASPDTKEENIAGVGAK
ILNVALGIRSFVQLWDNTTPTESSATAGTPGPGNPTDPLTTPGLSSGPQDGGTTLWLSTG
APSSPDAQRTEAGTLPAPPQPPPSPDRPRALLREPAVPPPSPGRPSLSSAWAGAPPQGSQ
PPPGWPQELDSEGLSPAAARPGQQHQRPDDRTRTPPPLALVTGSPGAHAGPWALSSDPSA
KLSHAALLALSGDRGAWVPHVANPAGPGLADNSALLGAAGRCLPLLPSLALCGHLGIGRF
WLPNHLHHASGEEVQATVRAWGALLQTHCHRFLGGGRPRDRDGPPHLTVAGGAWTGAQQP
EAAALYSPSQRLPLDWLPPWRRLAASGVGLGEVVGRTPVRVPQHRVARRGGEGGCRRRGP
GSSVSVCGQAGPLSRARRLPGRPGRSLLFVDCKEVQRQPLARSPRGLQLEPDARLFVAQA
GRADPDKFQGLISDLRLREDPQVSPLHCLDEDEEDDDDRASGDLGSGLAETWEHIGEELG
APLGPRLPEAPPVTSPPLAGVGNQEDFRTEEIEEETTVSSLGAQTLPSLSTVTTWAGSEW
SPGRGLKEGGLKGQKGEPGAQGPVGPQGPAGPAVQGPDAQPVPGPQGPPGPPGKDGAPGR
DGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRR
DRLTFIDMEGSGFGGDLESLRGPRGVPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPG
VPGRDGPPGLPGPPGPPGPPGKDGQPGQTGQKGSLGEAGAAGPKGSKGDPGPIGTPGEHG
PAGRPGPAGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGGPFWSTARGASGPQGPPGPPGV
KGDPGVMGPPGTKGEVGADGAPGAPGLPGREGAAGLQGPKGEKGPQGEKGDPGKDGVGQP
GLPGPPGPPGPVVYVSEQDRALASVPGPEGRAGLTGLPGPAGPKGDLGSRGQQGLPGPKG
EKGEPGMVFSPDGRALTSAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLK
GEKGEPGDASVGFSARGPPGPPGPPGPPGLPGTPVYDSNAFVESGRPGPPGLPGNQGPSG
PKGDKGEVGPPGPPGQFPFDLLHLGAEMKGEKGDQGAAGQKGERGEPGGGGFFSSSMPGP
PGPPGYPGIPGPKGESIQGQPGPPGPQGPPGIGYEGHQGPPGPPGPPGPPGPPSFPGPYR
QTISVPGPPGPPGPPGPPGSMGTSSGVRVWATYQTLLDQVPEVPEGWLVYVADREELYVR
VRNGFRKVLLEARTPLPRGTDNEVAALQPPVVQLHEGNPYPRREPPPPTARSWRADDILA
GPPRLTHAQPYPGAPHPGAYAHLRPATPTASPAHTHHDFQPVPRFPPQDEVLSPSWEALF
SGSEGQLKAGARIFSFDGRDVLQHPAWPQKSLWHGSDPSGRRLTESYCETWRTEARAATG
QASSLLAGRLLEQKAAGCYNAFIVLCIENSFMTSSSK
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atggctccggacccccgcggccgccgctgccactgctgcctgctgctgctgcttgcctgc
tgcctcgcgcccgcccgggctgacctgatgtcctggctgtggcccggtaacgctgccgtg
tccacggtcgcaccggcctctacgcccccgggcagctcacctgtgcggcccacagaggac
atcaccacgcacgtggccccccaggatgaccccacccagcagtggaaagcccttgccagc
cctgagccgcctctggagaggccggaggtgggccagggccaggcccccactgtcccttca
gcggcctccagtgcgagcccggacacaaaggaggagaacattgccggcgtcggagccaag
atcctgaacgtggctctgggcatccggagcttcgtccagctgtgggacaacaccaccccc
accgagagctccgccacggcaggaacgccaggccccgggaaccccacggaccccctcacc
accccgggactctccagcggcccccaggacggcgggaccaccctctggctgagcacaggg
gccccgagctctccggacgcccagaggaccgaggccggcaccctgcctgcccccccccag
ccgccgccctccccggacaggccccgggccctgctcagggagcctgcggtgccaccgcca
tccccaggtagaccttctctgtcctccgcgtgggccggggcccctccccagggaagccag
ccgcccccagggtggccccaggagctggacagcgagggactctcgcccgcggcagcccgt
cctggccagcagcaccaacgccctgatgaccgcacgcgcacgcctcctccgcttgccctg
gtgacgggctccccgggagcgcacgctggcccctgggctctctcctctgacccctctgcc
aagctgtctcacgccgcactcttggctctaagtggggacaggggtgcttgggttccccac
gtggctaatcctgcggggcctggtctcgctgacaactccgcactgctgggggctgccggc
cgctgcctgcccctgctgccctccctggcgctctgtggccacctgggcatcggacgcttc
tggctgcctaaccatctccaccacgcgagcggcgaggaggtgcaggccacggtccgggcc
tggggggcgctcctccagacccactgccaccgcttcctgggcggtggcagaccccgggac
agagacgggccgcctcacctcacggtggccggtggggcgtggacgggtgcacagcagccc
gaggccgcggccctgtacagcccatcgcagcgcctccccctggactggcttcctccctgg
cgccggctcgcagccagcggtgtggggctcggggaggtggtcgggaggacccccgtgcgg
gtcccccagcaccgtgtggccaggaggggaggggagggcggctgccgccgccgaggcccc
ggcagctccgtcagtgtctgcggtcaggctgggcccctgagccgtgcccgccgcctgcct
ggcaggcctggccggtccctgctcttcgtggactgcaaggaggtccagcgccagcccctg
gcgcgctccccacgcggcctgcagctggagcccgacgcccgcctcttcgtggcccaggct
ggccgagcagaccctgacaagttccagggcctgatctcagatctgaggctgcgtgaggac
ccccaggtgagccccctgcattgcctggatgaggacgaggaggacgatgacgatagggcg
tcaggagacttgggcagcgggctggcggagacctgggagcatatcggggaggagttgggc
gcacccctgggaccccggctccccgaggctcctccagtcacttctccacccttggctgga
gtgggcaaccaggaagatttcagaactgaggagattgaggaggagaccacggtgtcttcg
ttaggagctcagaccctccccagcttgagcacagtcaccacgtgggccgggagcgagtgg
agccctgggcgcggcctgaaagagggaggcctgaagggccagaaaggagaaccaggcgct
cagggccccgtcggtccccagggtcccgcaggcccggccgtgcagggccccgatgcacag
cccgttcccgggccgcagggacccccggggcccccagggaaggatggcgcccccggaagg
gacggcgagcccggtgatcctggcgaagatgggaaacctggggacaccgggccgcagggc
ttcccaggaaccccgggagacgtgggccccaagggcgagaagggggatcctggggtcggg
ccgaggggacccccaggaccccaagggcctccggggccacccggaccctccttcagacgt
gacaggctgaccttcatcgacatggagggatccgggtttggtggcgacctggagagcctc
cgcggccctcgaggcgtccccggcccccctgggccccctggcgtcccaggcctgcccgga
gagccaggccgcttcgggatgaacagctcagacgtccccggacccgcaggccttcccgga
gtgcctgggcgggatgggccccccgggcttcctgggcccccaggacccccaggtcctcca
gggaaagatgggcaaccaggacagaccggccagaaaggcagccttggcgaggcgggcgcc
gcaggacccaagggaagcaagggagaccccggccccatcggcacgcctggggagcacggc
ccggcaggacgccctggaccggcaggacccgcaggaccaccagggcccccgggccccccc
gggccaccaggccccgggctcgctgcggggtttgacgacatggaaggctccgggggcccc
ttctggtcgacagcccgaggtgccagtgggccgcagggaccgcctggcccgcctggagtc
aagggggatcctggagtcatggggccaccagggaccaagggagaggtcggagcagacgga
gctcctggggcccccggccttccgggcagggagggtgcagccggactccagggaccaaaa
ggagagaaagggccccagggagagaaaggcgacccagggaaggatggagtggggcagcca
ggcctcccgggaccccccggacccccagggcctgtcgtctacgtgtcggagcaggacaga
gcactggcgagcgtgccgggccccgagggccgggcggggctcacaggcctccccggacca
gccgggccgaagggagacctgggctccagaggccagcagggcctcccgggacccaagggt
gagaagggtgagccgggcatggtcttcagccctgacggcagagcgctgacctccgcccag
aaaggagccaagggtgagcctggcttccgaggacccccgggtccctacgggcggcccggg
cacaagggagagattggcttccctggacggccggggcgccccgggatgaacggactgaaa
ggggagaagggggagccgggagatgccagcgtgggattcagcgcgaggggtccgcccggc
ccacctgggcccccagggcccccgggccttcccgggactcctgtctatgacagcaacgcg
tttgtggagtctggccgccctggacccccgggattgccagggaaccaggggccttctgga
ccgaaaggtgacaaaggagaagtgggcccacccgggccaccagggcagttcccgttcgac
ctcctgcacctgggcgctgagatgaagggggagaagggtgaccaaggggccgccgggcag
aaaggagaaaggggcgagcccgggggcggcgggttcttcagctccagcatgcctggcccc
cccggcccgccaggctaccctgggattccggggcccaagggagagagcatccagggccag
cctggccctcctggacctcagggaccccctggcatcggctacgagggacaccaggggcct
cctgggccccccggacctccagggcccccgggacccccatcctttcctggcccttacagg
cagactatcagtgttcctggccccccaggcccacctgggcccccaggaccgcccggatcc
atgggcacctcctcaggggtgagggtctgggccacgtaccagaccctgctggaccaggtg
cccgaagtgccagagggctggctcgtctatgtggctgacagggaggagctgtacgtccgg
gtccggaacgggttccggaaggttctgctggaggcccgcacgcccctcccccgcgggacg
gacaacgaggtggccgctttgcagccccccgtggtgcagctgcacgagggcaacccgtac
ccccgccgggagcccccgccccccacagcgcggtcctggcgggctgacgacatcctggcc
ggccccccgcgcttgacacacgcccagccctaccccggggccccacaccccggcgcctac
gcgcacctccggccggcaacccccacggcctcacccgcccacactcaccacgacttccag
ccggtgccccgcttccccccgcaggatgaggtgctgtctcccagctgggaggccttgttc
tcgggctccgagggccagctgaaggccggtgcccgcatcttctctttcgatggcagagac
gttctacagcaccctgcctggccccagaagagcttgtggcacggctcggaccccagtggg
cgccggctgacggagagctactgcgagacgtggcggactgaggccagggcggccacgggc
caggcctcctcgctgctggcgggccggctgctggagcagaaagcggcgggctgctacaac
gccttcatcgtcctctgcattgagaacagcttcatgacctcctcctccaagtag
DBGET
integrated database retrieval system
