Balaenoptera acutorostrata scammoni (minke whale): 103009198
Help
Entry
103009198 CDS
T03086
Symbol
PCDHAC1
Name
(RefSeq) protocadherin alpha subfamily C, 1
KO
K16493
protocadherin alpha
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
103009198 (PCDHAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bacu03036
]
103009198 (PCDHAC1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bacu04515
]
103009198 (PCDHAC1)
Chromosome and associated proteins [BR:
bacu03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
103009198 (PCDHAC1)
Cell adhesion molecules [BR:
bacu04515
]
Cadherins
Protocadherins
103009198 (PCDHAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
103009198
NCBI-ProteinID:
XP_007194265
LinkDB
All DBs
Position
Un
AA seq
1460 aa
AA seq
DB search
MLFSWKGGPGARLLLLSLLFLVVWVAGSGQVHYSVPEEAKHGTFVGRITQDLGLELAELV
PRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVE
VEVTDINDNPPVFPESEKRIIIAESRPPETRFPLDGASDADIGVNSALTYRVYPNDYFTL
DTQNNREQTSSLSLVLRKSLDREDIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAP
EFDHLIYKVSMLENAFNGTLVIKLNATDPDDGTNADIIYSFRRPVSPAVLYAFSINPGSG
EIRTKGKLDFEEKKLYEIPVEAIDKGNIPMAGHCTILVEIVDINDNAPEVTVTSLPAASG
AHSPFRVGLYTGEISTTRALDEADAPRQRLLVLVKDHGEPALTATATVLLSLEDSGQAPK
ASSRASTGAAGAEAALVDVNVYLIIAICAVSSLLVLTLLLYTALRCSAPPSEGACGPGKP
TLVCSSAVGSWSYSQQRRQRVCSGEGPPKADLMAFSPSLPPCLSSAEVTGEIEPDSEQLK
EAALHSSAPGPHRFPRRLLSLQSSKPSSQPTGPGQFRYSEGERRRSLHLQSAAAVAGQLE
YSVSEETERGVAVGNVAQDLRLSAASLSLRNFRFLSSHGEPYFEVDLASGSLVVREPADR
ERLCGDKAACVLTYELVLEDPLELHKMHVHVLDTNDNSPHFPAGDVQLHIPEFLMPGARF
TLPNAQDADEGSSGLLSYSLSPSQHFRLDMGSRVDGSEYPELVWEKALDREQRATHRLVL
TARDGGLPARSGDAQVTIVVVDTNDNAPVFERSVYRTKVPETAPNGTVLFRVQASDPDEG
SNGEIRYSLSNSTQAKLRHHFHVHPRNGEVRVAASLGPPEALLEAYIEARDEGAFGLAST
AKLLVEVTDVNDHAPEVNLLTFSSPVSEDTATGTVIALLSVRDEDLGPNGKVVCSMSTGG
PFKLKASFDDYYSLLTDGPLDREQVSEYQGLITALDGGSPPLSTRRTLTVSVADVNDNTP
SFPQPKQELLVAENNGPGASLGRVFAQDPDLGKNGIVFYELLDIISEGQAASNLVAVDSS
SGAITAKISFDFEQLRGCHFQVEAEDGGIPPRSATVTVNLFVVDRNDNAPVILFPLPRNG
SVPVEIVPRSARTGHLVAKVVAEDADSGSNAWLSYYISQASDSSLFRISANMGELHTARL
VLPTDAVKQRVVVVVRDHGDPSLSTSVTLGVLLSNSVPRVLPDFEDGWETGGHLSAQNLY
LVIALASVSFLFLGCLLFFVSSKLSQIPGCCSQSCCRSPEELRYGSKMASNPCMTSATID
VTTVERLSQTYLYRASLGLGSDNNSLLLRGEYSAADLRNLASGVGLNVPISCIQTQNRKE
DRANVNAMNNLLTRPDQQPRDRGDRLNRTVGAGKKGVAVFPGSAGIRPVRGEGAGAGVAG
ATGQSGSPSATSVRNRSRTC
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcctggaaaggaggcccaggagctcggcttttgctactctcgcttctgttc
cttgtagtctgggtggcggggagcggccaggtccactactcggttccggaggaggccaaa
cacggaactttcgtgggccgcataacgcaggacctggggctggagctggcggagctggtg
ccgcgtctcttccgggtggcatccaaaggccgcggggaccttctggaggtaaatctgcag
aatggcattttgtttgtgaattctcggatcgaccgggaggagctgtgcgggcggagcgcg
gagtgcagcatccacctggaggtgatcgtggaccggccgctgcaggtgttccatgtggag
gtggaagttacagatattaacgacaacccgcctgtgttccctgaaagtgaaaaaagaata
atcattgctgaatctagacctccggaaactcggttcccactagatggcgcatctgatgca
gatattggagtaaactccgccttgacctaccgagtctatcccaatgattatttcactttg
gacacacaaaacaaccgtgaacaaacgtcttcgttatcacttgtgttaaggaaatcactg
gacagagaggacattcaggaacatagtttattattgacagctagtgatggaggcaaacct
gagctgaccggcacagttcagctgctgattacaatcctggatgtgaatgataacgcccca
gaatttgatcacttaatttataaagtgagcatgttagagaatgcatttaatggaacatta
gtgatcaaactaaatgccacagaccctgatgatgggacaaatgcagacataatctactca
tttagaagacctgtatcgcctgcagtattatatgcgttttccataaatcccggcagcgga
gaaattcggacaaaaggtaaattggatttcgaagaaaagaaattgtatgaaatacccgtg
gaagcaattgacaaggggaatattccaatggcgggtcattgtaccattttggtggaaata
gtagatataaatgataacgccccagaagttaccgtcacttctttgccggcggcgagtggc
gcgcacagcccgttccgcgtggggctgtacacgggcgagatcagcacgacgcgcgccctg
gacgaggcggacgcgccgcgccagcgcctgctggtgctggtgaaggaccacggcgagccg
gcgctgacggccacggccaccgtgctgctgtcgctggaggacagcggccaggcgcccaag
gcctcttcgcgggcgtcgacgggcgccgctggcgcggaggccgctctggtggatgtgaac
gtgtacctgatcatcgccatctgcgcggtgtccagcctgttggtgctcacgctgctgctg
tacacggcgctgcggtgctcggcgccgcccagcgagggcgcgtgcgggcccgggaagccc
acgctggtgtgctccagcgcggtggggagctggtcttactcgcagcagaggcggcagagg
gtgtgctctggggaggggccacccaaggcagatctcatggccttcagccccagccttcct
ccttgtctgagttctgcagaggtaacaggtgaaatagaaccagattcagaacagttgaaa
gaggcggcgctgcactcctccgcacccggcccgcaccgctttcccagacggctgctaagc
ctccagtctagcaagcctagctcgcagccgaccggccccgggcaattccggtattcggaa
ggcgaacgtcggcggtctctgcacctccagtcggcagcagcggtcgcgggacagctcgaa
tactccgtgtcggaggagaccgaacggggcgtagccgtaggcaatgttgcccaggacttg
aggctgtcagcggcctctctgtccttgcggaactttcgcttcctttccagccacggcgag
ccctacttcgaggtcgatctggccagcggaagcttggtggtcagagagccggcggatcgc
gaacggctgtgcggggacaaagctgcctgcgtcctgacctatgagctggtgctggaggac
ccgctggagctgcacaagatgcacgttcacgtcctggacaccaacgacaactcgcctcac
ttccctgccggcgacgtgcagttgcacattcccgagttcctgatgcccggagcccgtttt
actctccctaatgcccaagatgccgacgagggaagcagtgggttgctaagctacagcctg
agccccagccagcactttcgcctggacatggggtcgcgggtcgacggcagcgaatacccg
gagttggtatgggagaaagcgctggatcgggagcagcgtgccacccaccggctggtgctc
accgcccgggacggcgggctgccggcgcgctccggagacgcacaagtcaccatcgtcgtg
gtggacacaaacgacaatgcacctgtatttgagcgctcagtataccgcaccaaggtgcca
gagactgcacccaacgggactgtgctattccgagttcaagcctcggacccggatgaaggc
tccaatggggaaatccggtactccttaagcaacagcacgcaggcaaagctgcgacaccac
tttcacgtgcaccctagaaatggggaagtgcgggtagctgcttcactaggtccgcctgaa
gcgctgttggaggcatacatcgaggcgagggatgaaggcgccttcggtctagccagcacc
gccaaactgctggtggaagtgactgatgtgaacgatcacgctcccgaggtgaacctcctc
actttctccagtccagtttccgaggacaccgccactggcacagtgattgccctccttagt
gtaagggatgaggaccttggtcccaatggtaaggtcgtttgtagcatgtccactggaggc
ccttttaagctgaaggcttcctttgacgactactacagcttgctgactgatgggccgctg
gaccgggagcaggtcagtgaataccagggcctgatcaccgccttagatggtggctcgccc
ccacttagcacccgcaggacactgactgtgtcagttgctgatgtgaacgacaatacacca
agctttcctcaaccgaaacaggaacttcttgtggctgaaaacaatggccctggggcctcc
ctaggacgtgtgtttgcccaggacccagatctggggaagaatggcatcgtcttttatgag
ctgttggatattatctctgaagggcaggcagcctctaacttggtggcagtagactcctcc
agtggggctatcactgccaaaatttcctttgactttgagcagctcagggggtgtcacttc
caagtggaagccgaggatggtggcattcctcccagaagtgcaacagtgactgtgaacttg
tttgtggtagacaggaacgacaatgctccagtcatcttgtttcccttgcccagaaatggc
tctgtcccagtggaaattgtgccccgctctgccagaacaggacacttggtcgcaaaagtg
gtagcagaagatgcagacagtggctccaatgcttggctttcctactacatctctcaggct
tctgactcgagcctttttagaatttcagccaatatgggagagctccatactgctcgctta
gttcttcccactgatgcagttaaacagagggtggtggtagtggttcgggaccatggagac
ccatcactttccacctctgtcacactgggcgttctgttgagcaactctgtgcctcgggtc
cttccagactttgaagatggctgggaaacaggcgggcacctgtccgcccagaacctgtat
ttagtaattgccctggcctctgtttcctttttatttctggggtgcttacttttctttgtg
agtagcaagttgagccagatcccaggttgttgctctcagagctgctgtcgctctccagag
gagttgagatatggaagcaagatggcttcgaatccttgcatgacatctgccacaatagat
gtcactacagtcgaaagactttctcagacctatctctatcgggcctctctgggacttggt
tctgataataacagtttgctgttgcgtggggaatacagtgctgctgacctgagaaatttg
gcctctggggtaggactgaatgtgccaatatcctgtattcagactcagaataggaaagag
gatcgtgcaaatgtcaatgccatgaataatctccttacaagaccagatcagcagccgagg
gaccgtggagaccggctgaacaggacagtgggggcagggaaaaagggagtggccgtgttc
ccggggtctgctgggatccggccggtccggggcgaaggagctggggctggagtggctgga
gcgactgggcagtccgggtcgccgtccgccacctcggtgcggaatcggagccggacttgc
tga
DBGET
integrated database retrieval system
