Balaenoptera acutorostrata scammoni (minke whale): 103017248
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Entry
103017248 CDS
T03086
Symbol
PATL1
Name
(RefSeq) PAT1 homolog 1, processing body mRNA decay factor
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103017248 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacu03019
]
103017248 (PATL1)
Messenger RNA biogenesis [BR:
bacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103017248 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
103017248 (PATL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103017248
NCBI-ProteinID:
XP_007196562
UniProt:
A0A384BA56
LinkDB
All DBs
Position
Un
AA seq
696 aa
AA seq
DB search
MDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPRPGSLNSSIWDGSEVLRRI
RGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDVSERALPRRSTSPIIGSPPVRAVPIGTP
PKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGDRMSPNQLCSVPNSSLLGHPFPPSVP
PVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGF
RAFFSAPAPATPPPPQQHPPGPGPHLQNLRSQAPMFRPDTTHLHPQHRRLLHQRQQQNRN
QHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQ
NYFEKLEKLSAAEEVQGDAPKKERTKLITPQVAKLEHTYKPVQFEGSLGKLTVSSVNNPR
KMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPAL
MDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILM
TTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLMNLPQSAAAPAPANP
HLTAVLQNKFGLSLLLVVLSRGEDLQSSDPTSESTQSNQWTEVMFMATRELLRIPQAALA
KPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggacttgttgggtgatcatgaggagaatctggcagaaaggctcagtaagatggtgatt
gaaaatgaactagaggatccagctatcatgagggcagtacagaccaggccagtgttgcaa
ccccgaccaggaagtctcaattccagcatctgggatggatctgaagttctgaggcgaatc
cgaggaccactgcttgctcaggaaatgcctacagtgtctgtgttagaatatgccttgcct
cagaggcccccacagggcccagaagatgatcgggacgtttctgagcgtgcattaccgagg
cggtcaacgtcgcctatcattgggagtcctcctgttagagctgtccccataggcacccca
cctaagcagatggctgtacccagcttcaaccaacagattctgtgtccgaagcctgtccat
gttcgacccccaatgccaccacgctatcctgctccctacggtgataggatgtctccaaac
cagctctgcagtgtcccgaactcttccctactgggtcaccctttccctcctagtgttcct
cctgttctcagccccctgcagagagcacagcttcttggaggagcacagctacagcctgga
cggatgtctcccagccagtttgcacgggtccctggatttgttggtagtccacttgctgcc
atgaatcccaagttgctgcaagggcgagttgggcagatgcttcccccagcaccaggcttc
cgtgccttctttagtgctccagcccccgctacaccgccgcctcctcagcagcaccctcct
ggcccagggcctcacctgcaaaacctaagatcacaggccccaatgtttagaccagacaca
acccaccttcatccacagcaccgtcgactcttgcatcagagacagcaacagaatagaaat
cagcatcggaatctcaatggtgcaggagatagaggaagtcaccggagcagtcatcaggat
catctccgaaaggatccgtacgccaatctcatgttgcagcgagaaaaagattgggtctct
aaaatccagatgatgcagctgcaaagcactgatccctacctggatgatttttattaccag
aattattttgaaaaactggagaaactgtcagctgctgaagaagtgcaaggtgatgcccca
aaaaaggagcgtaccaagctcattacccctcaggtggccaaactggagcacacctataag
ccagtgcagtttgagggctctttgggaaagcttactgtctctagtgtgaataatccccga
aaaatgattgatgctgttgtgacgtctcggagtgaggacgatgagacaaaagaaaaacag
gttcgggacaaaagacgaaaaacccttgtcataattgagaagacctatagtttactcctt
gatgtggaggattatgaaaggcgttacctcctaagtctggaagaagagcgacctgccctg
atggatgaaagaaagcacaaaatttgtagcatgtatgacaacttaagggggaaattgcct
ggacaggagaggcccagtgatgaccactttgtacagatcatgtgcatcagaaaagggaag
agaatggttgcccgtattcttcctttcctctccacagagcaagcagctgacattctcatg
acaacagccaggaacctcccttttcttatcaagaaggatgcacaagatgaggtgctgcca
tgcttattgagtcccttctctcttctcctctatcatcttccatcagtgactgtcaccagc
cttctgcaacagctaatgaacctacctcagagtgcagctgcaccagcacccgccaatcct
cacctcactgctgtgctccagaacaagttcggcctgtcactgctcctcgtcgtcctgagc
cgtggggaagacctgcagagctcagaccccacttcagaatcaacgcaaagcaaccagtgg
acggaggtgatgttcatggcaacccgagaacttctgcggattccccaggcagccctggcc
aagccaatctctatacccacaaatctagtatccctgttttctcgttacgttgaccgacag
aaactgaacttgctggagacaaaactgcagctagttcaggggatacgataa
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