Balaenoptera acutorostrata scammoni (minke whale): 103017586
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Entry
103017586 CDS
T03086
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bacu
Balaenoptera acutorostrata scammoni (minke whale)
Pathway
bacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103017586 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacu03019
]
103017586 (PARN)
Enzymes [BR:
bacu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
103017586 (PARN)
Messenger RNA biogenesis [BR:
bacu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103017586 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
T6PP_C
NCBP3
Motif
Other DBs
NCBI-GeneID:
103017586
NCBI-ProteinID:
XP_007188428
UniProt:
A0A384AM65
LinkDB
All DBs
Position
Un
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSYTSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPSDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWINDTS
AFVSLSQPEQVPIAVNTSKYAESYRIQTYAEYVGTKHEEKQIKRKWTEDSWKEVERKRLN
TQCISYALQNHCYQANSLTATSTVGKRNLSPSQAEGGLEPRVSGEISDTELEQTDPCAES
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatctccacaaagtgtaccaggccatagag
gaggcggacttcttcgccatcgatggggagttttcaggaatcagcgatggaccctcggtc
actgcattaacaaatggttttgacactccggaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctctgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatct
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccatacttaaaccaggaagaagaaaga
cagttaagagagcaatatgatgaaaaacgtttacagtccaatggtgcaggcgctttgtcg
tacacgtctcctaacacttcaaaatgtcccgtgacgattcctgaggatcagaagaagttt
attgaccaagtggtagagaaaatagaagatttattgcaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaactgaaaagaaagagcgctatattgtt
atcagcaaagtagatgaagaagaacgtaaaagaagagagcagcagaaacacgctaaggaa
caggaagaactgaatgatgctgtggggttttctagagtcattcatgccattgctaattcg
gggaaacttgtcattggacacaatatgctcttggatgtcatgcacacagttcatcagttc
tactgccctctgccctcggacttaaatgagtttaaggagatgacaacatgtgtcttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcggaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggttttccaagttatgacacagcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggcaaactacctaggttctttt
cttagtcctccaaagattcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagctatttctcatgagagtcatggatatcccctatctaaacttggaaggaccagacttg
cagcctaaacgtgatcatgtcctccatgtgacattccccaaagaatggaaaaccagcgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggatcaatgacacatca
gcatttgtttctctcagccaacctgaacaagtaccaattgctgtcaataccagcaaatat
gcagagagctatcggatccagacctatgctgaatatgtggggacaaagcatgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
acgcagtgcatctcctatgctttgcagaatcactgttaccaagccaatagtctcacagcc
accagcacagtaggaaagagaaatctgagtcccagtcaagcagaaggtggcctggagccc
agagtatcgggggagatttctgacactgagcttgagcagacagatccctgtgcagaatcc
ctctcagagggaaggaaaaaggccaagaaattaaaaaggatgaagaaggacctttctccg
acaggaagcatctcggacagctcagccaagctctttgaggtccctgacacgtggtaa
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