Bacillus sp. V3: I7V34_03025
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Entry
I7V34_03025 CDS
T11035
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bacv Bacillus sp. V3
Pathway
bacv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I7V34_03025 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacv03019
]
I7V34_03025 (rnjA)
Messenger RNA biogenesis [BR:
bacv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I7V34_03025 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
pre-PUA_NIP7
Motif
Other DBs
NCBI-ProteinID:
QTC42249
LinkDB
All DBs
Position
complement(616549..618216)
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AA seq
555 aa
AA seq
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MKFVKNDQTAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
VKNADKIKGLFVTHGHEDHIGGIPYLLRELNIPIYGGKLALGLIKNKLEEHGLLRNAKLN
VIQEDDVIKFRKTSVTFFRTTHSIPDSYGIVVKTPPGNVVHTGDFKFDFTPVGEPANLAK
MAEIGKEGVLCLLSDSTNAEVPNFTMSERKVGESINDIFRKVDGRVIFATFASNIHRLQQ
VVEAAVYHNRKVAVFGRSMEAAITIGQELGYIRAPKDTFIEHNQINRLPANEVAILCTGS
QGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPIPGNTISVNRTINMLFRAGAEVIHGPL
SDIHTSGHGGQEEMKLMLRLMNPTFFMPIHGEFRMQKMHAQLGVDCGVREENCFIMDNGE
VLALSNDSAQVAGKIPSGNVYIDGSGIGDIGNIVLRDRRILSEEGLVIVVVSIDMKEFKI
ASGPDLISRGFVYMRESGDLINEAQNLIAKHLNKVLERRTSQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtgaagaatgaccaaaccgcagtatttgcccttggcggtttaggtgaaatc
ggtaaaaacacatatggcgtacagtttcaagatgaaatcattttaatcgacgcagggatc
aagttccctgaagatgagctgctcggtattgattatgtaattcctgattacacatacctt
gtaaagaacgcggataagatcaaaggactcttcgtcactcatggccacgaagaccatatc
ggagggatcccatatcttctgagggaattgaatatcccgatctacggcggcaaacttgct
cttggccttattaagaataaacttgaagagcacggtttattaagaaatgccaagcttaat
gtcatccaggaagatgatgtgatcaagttccgtaaaacatccgtcactttcttcagaaca
actcacagtatcccggattcttatggaatcgtcgttaagacaccacctgggaatgtcgtt
cacactggagactttaaattcgacttcacacctgtcggcgagcccgcgaacctcgctaaa
atggctgaaatcggaaaagaaggcgtgctttgcctgttgtccgacagtacgaatgctgaa
gttccaaacttcacaatgtcggaacgcaaagtcggagaaagcatcaatgatatcttccgt
aaggttgacggacgtgtcatctttgctacattcgcttcaaacattcaccgccttcaacag
gtggttgaagcagctgtttaccataaccgtaaagtagccgtatttggccgcagtatggaa
gcagccatcaccatcggacaggaattaggatatatcagagcacctaaagatacattcata
gaacacaatcagatcaatcgtctgcctgccaatgaagtagcgatactttgcacaggttct
caaggtgagccgatggctgccttatcaaggattgcgaatggtactcaccgccagatacaa
attcagcctggcgataccgtcgtattctcatcttccccgatcccagggaacacgatcagt
gtaaaccgcacgatcaatatgctgttccgtgccggagccgaggtcattcatggacctcta
agtgacattcatacatcaggtcacggcggacaggaagaaatgaaattgatgctgcgcctc
atgaatccaacattcttcatgccgatccacggtgagttcagaatgcagaaaatgcatgcc
cagctcggtgtcgattgcggagtgcgtgaagaaaactgcttcatcatggataatggagaa
gtgcttgcattaagcaatgactctgcacaagtggcaggtaagatcccttctgggaatgtc
tacattgatggaagcggaatcggggacatcggtaacatcgtattgcgcgaccgccgcatc
ctttctgaggaaggcctagtcatcgtagtcgtaagcatcgatatgaaagaattcaaaatt
gcgtcaggcccggacctgatttccagaggattcgtttatatgcgtgaatccggcgatctc
atcaacgaagcacagaatctgattgccaagcatttaaacaaagtactggaaagaagaaca
tcacaatggtctgaaatcaagaatgaaatcactgataccctggctccattcttatatgaa
aaaacaaaacgccgtccaatgatcctgccgatcatcatggaagtataa
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