Bacillus sp. V3: I7V34_07970
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Entry
I7V34_07970 CDS
T11035
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bacv Bacillus sp. V3
Pathway
bacv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bacv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I7V34_07970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacv03400
]
I7V34_07970
Enzymes [BR:
bacv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I7V34_07970
DNA repair and recombination proteins [BR:
bacv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I7V34_07970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
QTC43162
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Position
1575507..1577345
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AA seq
612 aa
AA seq
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MRPMLPTLTTEAPNKGKWNYEVKYDGFRGILKIDASGVISLTSRNNKDLLPHFPEIKAYI
TDLLQTASLSLPLVLDGEVAILRSAYCSEFFELQIRGRMKNNQKVKEAAAARPVKFLAFD
LLRSGNERWQDSPYKERKEALKKLFTAEGIPIIPDPANPAALQMIPSYKEWNKVWGGVVK
EEGEGVVAKLVDSNWEEGKRSPAWLKIKNWKKCLCFITSVDVSNDYFHIGVFEGKEIKKI
GVFHFGISPDEKRTLKEIIKANHSRKEDSHYYIDPSICVEVLYLNWHENQLREPHFKQFM
FSTRPEECTMERFLLDEASLPQNVDITHPDKPLWEEPPVTKLDFIRYLRRVSAVMLPFLD
NRPLTCIRYPHGMYGDSFYQKNVPEYAPEYVETYGQDGIEYIICNSLETLIWLGNQLALE
FHVPFQKTGQGDVNEIVFDLDPPSRAEFSLAVKAALVMKDLFEGLNLRSFVKTSGNKGLQ
VYIPLPRGYSWKDTGVFTEFIAHYLVSNYPDDFTIERLKKNRKGRLYVDYIQHAEGKTII
APYSLRGNDKALVAAPLWWHEVNEELTPEKFTMKEVLKRLTKLGCPFREFDRAKAQQPFN
DVITFLNGNAKK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgagaccgatgctgccgactctcaccactgaagctccgaacaaaggtaaatggaactat
gaagtaaaatatgatggattcagagggattttaaaaattgatgcttcaggcgtcatttca
ctcaccagcaggaacaacaaagatttactgcctcatttccccgaaataaaagcatacata
acggatttgcttcaaacagcttccctttccctcccactcgttctggatggtgaggtggcc
attctgcgttctgcgtattgcagtgaattctttgaattgcagatcaggggaaggatgaag
aacaatcaaaaagtcaaagaggcagcagccgcaagaccggtcaaattcttagcgttcgac
ctattgcgaagcgggaatgaacgatggcaggattctccctataaggaacggaaagaggcg
ctaaagaaactttttacagctgaaggcatccccattattccagatcctgcaaacccggct
gccttgcagatgattccctcttataaagagtggaataaagtatgggggggagtcgtaaaa
gaagaaggtgaaggggtagttgcaaaactagtggacagcaattgggaagaaggaaaacgg
agtccggcatggctgaaaataaaaaactggaaaaaatgcttatgttttatcacttcggtc
gatgtatccaatgattattttcacataggcgtatttgaaggaaaagaaattaagaaaatc
ggagtgtttcattttggtatttcacccgatgagaaaaggacgctgaaagaaatcatcaaa
gcaaatcattcccgcaaagaggacagtcattattatatcgacccgtctatatgcgttgag
gttctctatctgaattggcatgaaaatcaattaagggagccgcatttcaaacagttcatg
ttctcaacccggccagaagagtgtacgatggaaagatttttactggatgaagcaagcctt
ccccaaaacgtagacatcacgcacccggacaagcctctttgggaagaacctcctgttacc
aagttagattttatccggtaccttcgccgggtttcagctgtcatgcttcctttcctggat
aaccggccattgacgtgtatccgctacccccatgggatgtatggagactctttttatcaa
aagaatgtccctgaatatgctcctgaatatgtagagacttatggacaggatgggattgaa
tatatcatctgcaatagcttggagactcttatttggcttggaaaccagctggcactggaa
tttcacgtcccttttcagaaaacggggcaaggagatgtcaatgagattgtctttgactta
gatcccccaagcagggcggagttttctctcgcggtgaaggcagcccttgtcatgaaagat
ttgtttgagggactgaacttaaggagctttgttaaaacttcaggaaacaaaggccttcag
gtctatattccgctgccccggggttattcatggaaagacactggggttttcacggaattc
attgctcattaccttgtatccaattatcctgatgatttcacaatcgagaggttaaaaaag
aacaggaaaggccggctgtacgtggattacattcagcatgctgaaggaaaaacgatcatc
gctccttactcattgagagggaacgacaaagccctggtggctgcaccactctggtggcat
gaagtaaatgaagagctgactcctgagaagtttaccatgaaggaagtgttaaagcggtta
acaaagctcggctgtcccttccgcgagttcgaccgtgccaaggctcagcagccctttaat
gatgtgatcacattcctgaatggaaacgccaaaaagtaa
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