Bacillus sp. V3: I7V34_16970
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Entry
I7V34_16970 CDS
T11035
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bacv Bacillus sp. V3
Pathway
bacv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I7V34_16970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacv03400
]
I7V34_16970 (mfd)
Enzymes [BR:
bacv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I7V34_16970 (mfd)
DNA repair and recombination proteins [BR:
bacv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I7V34_16970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTC40813
LinkDB
All DBs
Position
3419630..3423163
Genome browser
AA seq
1177 aa
AA seq
DB search
MKGILKQIHQSEELQSLITGIDEQLSEQLVAGLSGSSRTAYIADVYLETGKSSMVVTHNL
FQAQKIYDDLIQFLSEDEVFLYSANELIAAELSVASPELRSQRIEVLNKLSKNQKGVYIV
PVAGLRKILPEKKQWEKNQITFTQGEDIDLDDMLNQLVQMGYQRTGMVNTPGEFSLRGGI
VDIYPLTLPNPVRIELFDTEIDSIRTFSVDDQRSIDKLTTIEIGPSSEVLMNYEDMDSLI
KKIESGMAKSLKKIKTDSVKEKLTEYIGHEIAQLENGQIPEQIFKYLSLAYETPSSLLDY
LPSDSVIYFDEYSRIMETSESLEREEAEWYTSLLQDGQIIHDISVSHKFQSLTANTKLPK
VYFSLFLRHIPNTSPQNIFNVSSKPMQSFHGQMNVLKAELDRWKKGKYTVVLLGPDEERV
KKLQRVLDDYKIEIAFVEDSSKLLKGKVQMINGSLTNGFELPMQKLAVITEEELFNKKTK
KKPRRQKLSNAERIKSYSELKVGDYVVHVNHGIGKYLGLETLEINGVHKDYLHVKYQGSD
KLYVPVEQIELVQKYVGSESKEPKLYKLGGTEWKKVKSKVQSSVQDIADDLIKLYAEREA
ARGYAFSPDGDMQRDFETAFPYEETDDQLRSIHEIKHDMEKERPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVAFLVPTTILAQQHYETIKERFQDFPIEIGLLSRFRSRKQQQETIK
GLKAGTVDIVVGTHRLLSKDIQYRDIGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMEYNGPLIKEAIEREMARNGQVYFLYN
RVEDIERKADEISMLVPDARIAYAHGQMSESELESVILGFLTGEYDVLVTTTIIETGVDI
PNVNTLIVFDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDLPKQPAST
FEVDIEVDAYIPDDYIKDGHQKIEMYKRFRSISSLPEIEELQEEMLDRFGEYPEEVEYLF
LISEMKVFAKNTDLENIKQEQKNVNIYMSPEGTNRIDGSKVFDICNKHGRAVGLGMEGSK
LKISINTARLETSKWFHMAYDIIKNLDTALKEENHVS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggtattttaaaacaaatccaccaaagtgaagaacttcaatccctcatcacggga
attgatgaacaattatcagaacagcttgttgcagggctgtcaggctcatcgcgcacagcc
tatatcgccgatgtttatttagagactggcaaatcctcaatggtcgtcacgcacaatctt
ttccaggcccagaaaatatatgacgatctcattcaattcctttcagaagatgaggtattc
ctatattccgccaacgaattgattgcagcagagctcagtgtggcaagtcccgaactgcgt
tctcagcggatcgaggtgttgaataagctgtcaaaaaatcaaaaaggtgtatacattgta
cctgtcgcagggcttagaaaaatccttccggagaaaaaacagtgggaaaagaatcaaatc
acctttacccagggagaagatatcgatctggatgatatgctgaatcaattggttcaaatg
ggatatcagcgcacggggatggtcaacaccccgggagaattcagtctccgcggcggtatt
gtcgatatttacccgctgacccttccgaaccctgtccggattgaacttttcgatacagaa
atcgattcgatccgtacgttctcagtggatgatcagcgctcaatcgacaagcttacaacc
atcgaaatcggcccttcttcagaagtgttgatgaattatgaggatatggacagcttgatc
aagaagattgaatccggaatggcaaaaagtctgaaaaagataaaaacggacagtgtaaaa
gaaaagttgaccgaatacatcggacacgaaatcgcgcagctagaaaacggtcagattccc
gagcaaatcttcaagtatctctcgcttgcctacgagacgcctagtagtttgctagactat
ctgccttcagacagcgtgatctacttcgacgaatacagcaggatcatggagacaagcgaa
tctctggaaagagaagaagcagagtggtatacgtccctgctgcaggatggacagatcatc
cacgatatttcggtgtcccataagtttcaatccttgacggcgaatacgaagctgcctaag
gtttatttttcattgttcctccgccatatcccgaatacaagccctcagaatattttcaat
gtgtcctcgaaaccgatgcagagttttcatgggcagatgaatgtcctgaaagcagagctc
gaccgctggaagaaagggaaatatacggtcgtcctgctggggccggatgaagaacgtgtt
aagaagcttcagcgagtacttgacgattataaaatcgaaatagcctttgtcgaagacagt
tccaaattattaaagggcaaagtccagatgatcaatggaagcctgacgaacgggttcgag
cttccgatgcagaagcttgccgtcatcaccgaagaagaactgttcaataaaaaaaccaaa
aagaaaccgagaaggcagaagctttcgaatgctgaaaggatcaaaagctactccgaactg
aaagtcggggattatgtagtgcacgtgaaccacgggatcggaaaataccttgggcttgaa
acacttgaaatcaatggagtccacaaggattatcttcatgttaaataccagggcagcgat
aaactgtatgtcccggttgagcagatcgagcttgtccaaaagtatgtcggttctgaaagc
aaagaaccgaagctttataaactcggcggcactgagtggaagaaggtcaaatccaaggta
cagtcatccgtccaggatatcgcagacgacttgatcaagctgtatgctgagcgtgaagcc
gcaaggggatatgcgttctcgccggatggcgatatgcagcgtgatttcgaaacggccttc
ccatatgaagaaacggatgatcaattaaggtcgatccacgaaatcaagcacgatatggaa
aaagaaaggccgatggatcgattgctctgcggagatgtcggatacgggaagacggaagtg
gcgatccgtgctgccttcaaagcgatcgctgacggcaagcaggtagccttcctggtaccg
accaccatactcgcccagcagcattatgaaacgatcaaggagcgttttcaggacttcccg
attgaaatcggcctgttgagccggttccggtcgaggaagcagcagcaggagaccatcaag
ggattgaaggcaggaacggtcgatatcgtagtcggcacacaccgtctattatcaaaagat
atccaataccgtgatatcggactgctcatcatcgatgaagagcagagattcggtgtcacc
cataaagaaaaaatcaaacagctcaaaacgaatatcgacgtgctgacgctgacggccacc
ccgatcccccgcacccttcatatgtcgatgctcggggtgagggatctatctgtcatcgaa
acaccgcctgaaaaccgcttccctgtgcagacatatgtcatggagtacaacggacctctc
atcaaagaggcgatcgagcgggagatggcgcggaacggacaggtgtatttcctctataac
cgggtcgaagatattgaacggaaagcggatgaaatctcgatgctcgtgcctgatgccagg
attgcgtacgcacacggacagatgagtgaaagtgagctcgagtcggtcatcttaggcttc
cttacaggggaatatgatgtgctcgtcacgaccacgatcatcgagacaggggtcgacatc
ccgaatgtcaatacacttatcgtcttcgatgctgaccgcatgggcttatcgcagctgtat
cagctgcgtggacgggtaggacgttcgaacagggtggcgtatgcgtacttcacgtaccgg
aaggacaaggtcttgaccgaagtggctgaaaaacgcctccaggccatcaaggagttcacg
gagctcgggtccggattcaaaatcgccatgcgtgacctcacgatccgtggtgcagggaat
ctgctcggggcgcagcagcacggattcatcgactcagtcggattcgatctgtattcgcaa
atgctgaaagaagccatcgaggaacggaagggagatcttccgaaacagcctgcctccacg
tttgaagtcgatattgaagtggatgcctatatcccggatgactacatcaaggacggacat
cagaagattgagatgtataagcgattccgctcgatctcttcactgcctgaaatagaagag
ttgcaggaagagatgctcgaccgctttggtgaatatccggaagaagtggaatacctattc
ctcatttccgagatgaaggtctttgccaaaaacacggacctggaaaacatcaagcaggag
cagaaaaacgtaaacatctatatgtctccggaaggaacaaaccggatcgacggatccaaa
gtattcgatatctgcaacaaacacggacgtgcagtcggactcggaatggaaggctccaaa
ctgaaaatatccatcaacaccgcacgccttgaaacatccaaatggttccacatggcctac
gacatcatcaaaaacctggatactgccctaaaagaagaaaaccacgtttcgtga
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integrated database retrieval system
