Bacillus sp. WP8: QR42_08075
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Entry
QR42_08075 CDS
T03530
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bacw
Bacillus sp. WP8
Pathway
bacw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR42_08075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacw03019
]
QR42_08075
03016 Transfer RNA biogenesis [BR:
bacw03016
]
QR42_08075
Enzymes [BR:
bacw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
QR42_08075
Messenger RNA biogenesis [BR:
bacw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QR42_08075
Transfer RNA biogenesis [BR:
bacw03016
]
Prokaryotic type
tRNA degradation factors
QR42_08075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AIZ60225
LinkDB
All DBs
Position
1629384..1631501
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AA seq
705 aa
AA seq
DB search
MGQEKHVFTIDWAGRQLTVETGQLAKQANGAVLVRYGDTAVLSSATASKEPKPLDFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKAILASRLIDRPIRPLFADGFRNEVQVISIVMSV
DQDCSSEMAAMFGSSLALCVSDIPFEGPIAGVTVGRVDGKLIINPNVEQLEQSDINLVVA
GTKDAINMVEAGADEVPEETMLEAIMYGHQEIKRLIEFQEEIVKAVGKEKIDIPLYEVDQ
TLADEVKALAEADLLKAIQVHEKHAREDAISAVKKAVVEKFEAEERDEATIKQAKDVLNK
LVKNEVRRLITEEKVRPDGRGVDQIRPLSSEVGLLPRTHGSGLFTRGQTQALSICTLGAL
GDVQILDGLGVEESKRFMHHYNFPQFSVGETGPMRGPGRREIGHGALGERALEPVIPSEK
DFPYTVRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGEYYTVLT
DIQGMEDALGDMDFKVAGTSKGVTALQMDIKIDGLSKDILEEALQQAKKGRMEILDSMLS
TIPASRGELSRYAPKILTMTINPDKIRDVIGPSGKQINKIIEDTGVKIDIEQDGTIFISS
TEEDMNQKAKKIIEDLVREVEVGQLYLGKVKRIEKFGAFLEIFSGKDGLVHISELALERV
GKVEDVVKLGDELLVKVTEIDKQGRVNLSRKAVLREEKEKEEKQS
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgggacaagagaaacatgtcttcaccatagactgggctggacgtcaactgacagttgaa
actggccagcttgcaaagcaagcaaacggagcggtcctcgtacgctacggagatacagct
gtgcttagctcagcaacagcttctaaagaaccaaaaccacttgatttcttcccgctcact
gtgaactacgaagaaagactatacgcagtaggtaaaattcctggcggcttcattaaaaga
gaaggccgtccaagtgaaaaggcgatccttgcaagccgcttaattgacagaccaattcgt
ccgctgtttgcagatggatttagaaacgaagtacaagtcattagtatcgtcatgagtgtg
gatcaagattgctcatctgaaatggctgcaatgtttggctcatctttagctttatgtgtg
tctgacattccatttgagggaccaatcgccggcgttacagtaggacgagtggatggaaag
ctcatcattaacccaaatgtggagcagcttgaacaaagtgacatcaatcttgtggttgct
ggaacaaaagatgcgatcaacatggtagaagctggtgctgatgaagtaccggaagaaaca
atgcttgaagcgatcatgtacggtcaccaagaaatcaaacgcttaatcgaattccaagaa
gaaattgtgaaggcagtcggtaaagaaaaaatcgatattcctttatatgaagtagatcaa
acgttagcagacgaagtaaaagcccttgctgaagcagacctgctgaaagcgattcaagta
catgagaagcatgcgcgtgaggatgcaattagtgctgtgaaaaaagctgtagttgagaag
tttgaagcagaagaacgtgacgaagcaacgattaaacaagcgaaagatgtattaaacaag
cttgtcaaaaacgaagttcgccgtctgatcactgaagagaaagtacgtccagatggacgc
ggtgtagatcaaatccgcccactttcttcagaagtaggactcctgccaagaacgcacggt
tcaggcttatttacaagaggacaaacacaggcgcttagtatttgtacattaggtgcactt
ggcgatgtgcaaattcttgatggtctaggtgttgaagaatcaaaacgcttcatgcaccat
tacaacttcccgcagttcagtgttggtgagacaggtccaatgcgcggtccaggccgccgt
gagatcggacatggcgcactaggtgaacgtgcactagaaccagtcattccatccgaaaaa
gatttcccttatacggttcgccttgtttcagaggtattagaatcaaacgggtctacttca
caagcaagtatttgcgcaagcacacttgcgatgatggatgcgggtgttccaattaaagca
ccagttgcagggattgcaatgggacttgtgaaatcaggggaatactacacagtgctgaca
gacattcaaggaatggaagatgcacttggagatatggactttaaagttgcaggtacatca
aaaggtgtcacagcacttcaaatggacatcaaaatcgatggtctatcaaaagacatctta
gaagaagctcttcaacaagcgaaaaaaggaagaatggaaatcctagacagcatgctgtca
acgattcctgcttctagaggagaattgtctcgttatgcaccaaaaatcttaacgatgaca
atcaatccggataaaattcgcgatgtcattggaccaagcggtaaacaaatcaataaaatc
attgaagataccggtgtaaaaatcgatattgaacaagatggtacaatctttatttcttct
acagaagaagatatgaaccaaaaagcgaagaaaatcattgaagatcttgtgagagaagtt
gaagtaggacagctttacctaggtaaagtcaaacgcattgaaaaattcggtgccttcctt
gaaatcttcagcggaaaagatggacttgttcatatttctgagcttgcgcttgagcgtgtg
ggcaaagtagaagatgttgtgaaacttggcgatgaattacttgtcaaggtcactgaaatc
gataaacaaggccgtgtgaacctctctcggaaagctgttttacgtgaagaaaaggaaaaa
gaagaaaagcagtcttaa
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