Bacillus sp. WP8: QR42_15280
Help
Entry
QR42_15280 CDS
T03530
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bacw
Bacillus sp. WP8
Pathway
bacw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QR42_15280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacw03019
]
QR42_15280
03016 Transfer RNA biogenesis [BR:
bacw03016
]
QR42_15280
Enzymes [BR:
bacw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QR42_15280
Messenger RNA biogenesis [BR:
bacw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QR42_15280
Transfer RNA biogenesis [BR:
bacw03016
]
Prokaryotic type
tRNA degradation factors
QR42_15280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_HELZ2
CSD
AEP_C962R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AIZ61540
LinkDB
All DBs
Position
complement(3011747..3014089)
Genome browser
AA seq
780 aa
AA seq
DB search
MQKEEFMDELLAFMKEEAYKPLTVQELEVMMEITNPDDYKELVKALVTLEDQGLIVRTRS
DRYGVPEKMNLVKGKLSAHAKGFAFVTPEEFGQDDIFIPPNELGTAMNGDTVMVRVSHKS
NGTKKEGTVIRILERNTQTVVGTYTETKSFGFVIPDDKKITNDIFIPKSAKNGAVEGHKV
VVTLTSYPEGRMSAEGEVTEILGHKNDPGIDILSIIHKHGLPGEFPEEALQQAADTPETI
DEKDLEGRRDLRNETIVTIDGADAKDLDDAVTVQKLDDGKYKLGVHIADVSHYVTENSPI
DQEAYERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMVIDRNGKVVKHEIFQ
SVIKTTERMTYSDVNKILVDQDEELLNKYESLVPMFQEMEKLAEILRDKRMERGAVDFDF
KEAKVLVDDEGAAKDVVIRERSVAEKLIEEFMLVANETVAEHFHWMNVPFIYRIHEEPNP
EKLQRFLEFVTTFGYIVKGTSTNIHPRALQSVLDAVRDQPEEVVIQTVMLRSMKQAKYDP
ESIGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIQKKTDEATLEKWGQLLPEIADHA
STMERRSVDAERETDDLKKAEFMLDKIGEEFDGMISSVTNFGLFVELPNTIEGLVHVSYM
TDDYYRFDEQHFAMIGERTGNVYRIGDEITVKVVNVNKDEHSIDFEIVGMKGTRRKSPKD
FKFKKRTDPPAKKGRGGQKASGEKGKEDKSGSDWFTSRKKKKKKKRVFENAPKQKRKKKK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaaagaagaatttatggatgaattactcgcttttatgaaagaagaagcgtataaa
ccgttaaccgttcaagagctggaagtcatgatggagattaccaatcctgatgattataaa
gagctcgtcaaagcacttgtgacgctggaagatcaaggactcatcgttcgcacgcgcagc
gaccgttacggtgtaccagaaaaaatgaatttagtaaaaggaaagctgtctgctcatgca
aaaggatttgcatttgtgacgcctgaagagtttggacaggatgatattttcattccccca
aatgagttaggcacagcgatgaatggcgatactgtcatggttcgtgtcagccacaaatca
aacggcacgaaaaaagaaggaactgtcatccgcattctggagcgtaatactcagacggtt
gtcggtacctatactgaaacgaaaagctttggctttgtcattcctgatgataaaaaaatc
acaaacgatatcttcattccgaaatccgctaaaaacggagcggttgaaggtcataaagtc
gttgtgacgctgacaagctaccctgaaggaagaatgagtgcagagggtgaagtgactgaa
atccttggtcataaaaatgaccctggcattgatattttgtcgatcattcataaacacggt
ctgccaggtgaattcccagaagaagcacttcagcaggcagcggacacaccggaaacgatt
gatgaaaaggaccttgaaggcagacgtgatctgcgcaatgaaacgatcgtgacgattgac
ggtgcagatgcgaaggacttagatgatgccgtaaccgtgcaaaagctggatgatggcaaa
tataagctcggcgtgcacattgcagacgtttctcattatgtcacagagaattcaccgatt
gatcaggaagcatatgaacgtggaacgagtgtgtatctcgtcgaccgcgtcattccgatg
attccgcatcgtttgtcaaacggtatttgttcattaaatccaaaggtcgatcgtctcacc
ctgtcttgtgaaatggtcattgatcgtaacgggaaagtcgtcaaacacgagattttccaa
agtgtgatcaaaacgacagagagaatgacctattccgatgtaaataagattttagtcgac
caagacgaagagcttctaaacaaatatgagtcgcttgttccgatgttccaagagatggag
aagcttgcagagattctacgtgacaaacgaatggagcgcggagctgtagactttgatttc
aaggaagcaaaagtacttgtagatgatgaaggcgcagcgaaagatgttgtcattcgtgag
cgttccgttgcagagaaattaattgaagaattcatgcttgttgcaaacgaaacagttgca
gagcatttccactggatgaatgttccgttcatttaccgaattcacgaagaaccaaatcct
gagaaacttcagcgctttttagagttcgtgacgacgtttggttacattgtaaaaggaacg
tcaacgaatattcacccgcgcgcacttcaaagtgtcctcgatgctgtcagggatcaacca
gaagaagtcgtcattcaaactgtgatgcttcgctctatgaaacaggcgaagtatgatcca
gaaagcattggccattttggattatcaacggaattctatacacatttcacatcaccgatc
cgacgttacccggatttaatcgtgcatagactgattagaacctatttgattcagaaaaag
acagatgaagcgactttagaaaagtggggccagctgctgcctgaaatcgcagatcatgcg
tcgacaatggagcgccgctcagtcgatgcagagcgtgaaacagatgatctgaagaaggca
gagtttatgctagataaaatcggtgaagagtttgatggcatgattagttccgtgacgaac
ttcggactattcgttgaactgccaaatacgatagaaggtcttgtccatgtcagctacatg
actgacgactattatcgctttgatgagcagcactttgccatgatcggtgaacggacagga
aatgtctaccgaatcggtgatgaaatcactgtcaaagttgtgaatgtcaataaagatgag
cactcgattgattttgaaatcgtcggtatgaagggcactcgccgtaaatcaccaaaagat
ttcaagttcaaaaaacggacagatccaccagcgaaaaaagggcgtggaggtcaaaaagcc
tctggggaaaaaggcaaagaggataaaagcggaagtgactggttcacaagccgtaaaaaa
aagaaaaagaaaaaacgcgtatttgaaaacgcaccgaaacaaaaacgcaaaaagaaaaag
taa
DBGET
integrated database retrieval system
