Bacillus sp. YP1: QF06_15480
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Entry
QF06_15480 CDS
T03701
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bacy
Bacillus sp. YP1
Pathway
bacy02020
Two-component system
bacy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bacy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
QF06_15480
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QF06_15480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bacy03021
]
QF06_15480
Transcription machinery [BR:
bacy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QF06_15480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
MarR_2
HTH_17
DUF1425
HTH_IclR
HTH_23
Sigma70_r4
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AJO60778
LinkDB
All DBs
Position
complement(3137557..3138867)
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AA seq
436 aa
AA seq
DB search
MDMKLQQVQVLKPQLTQELRQAITLLGYHSAELAEYIDELSLENPLIERKETDTPPLSYH
KTNKNRMNAQEAGLQLSDPQKTLQDALKQQSLDMNLTNTEKKIFNYLIHSLDSNGYLEED
VEEAARRLSVSAKETEAVLAKLQSLEPAGIGARSLQECILLQLQRLPNRNEQAEMLISAH
FDAFAQKKWKALSVETGIPLHTIQDISDDIAALHPRPGLLFARPEQDVYIEPDIFITVKN
GHIAAELNTCSFPEIDLHPQYRTLLSSGSCQDTVSYLSAKYQEWRWLSRALRQRKQTITR
IINELITRQKDFFLKGRSAMKPLTLREVADCLSLHESTVSRAIKGKTIQTPYGLFEMKLF
FSAKAEASGEGDASNYAVKMHLEDLINQEDKTKPLSDQKLVDLLYEQHGIQISRRTVAKY
RDQMNIPSSAARKRYK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggatatgaaacttcagcaagtacaagtattaaagcctcaactgacacaggagctcagg
caggccatcacgctgcttggctatcattcggcagaactcgccgagtacattgatgagctc
tcactggaaaaccctcttattgaacgaaaggaaacagacacaccgccactatcttaccat
aaaacaaacaaaaacaggatgaatgcacaggaagcgggccttcaattaagtgatccgcaa
aaaacattgcaggatgcgttaaaacagcagtcactcgatatgaatctgaccaacactgaa
aaaaagatttttaattatctgattcattcgcttgattcaaacgggtacttggaagaagat
gtggaggaggcagcacggcgcctatctgtatcggctaaggaaacggaggctgttttggca
aaactccagtcattagaaccggctggaatcggtgcgagatctttgcaggaatgcatcctt
cttcaattacagcggctgccgaacagaaatgaacaagcggaaatgctgatttcagctcat
tttgatgcttttgcgcaaaaaaaatggaaagcgctttcagtagagacgggaattccgctt
cataccattcaagatatctcagatgatatcgcggctcttcatcctagacctggccttctg
tttgcccggccagagcaagatgtgtatattgagcctgacatttttatcaccgtaaaaaac
gggcacattgcagcggaactgaatacctgctcgtttcccgagatcgatctgcatccgcag
tacagaacgcttttatcatccggctcctgtcaggatactgtctcctatttatctgcgaaa
tatcaggagtggcgctggctgagccgcgcgctgcggcagcgaaaacagacaatcacgaga
attatcaatgaactgatcacacgccaaaaggatttctttctgaaagggcgaagcgcaatg
aagccgctgactctcagagaggtggcggactgtctaagccttcatgaatcaactgtgagc
cgggccattaaagggaaaacaatacaaacgccttacgggctgtttgagatgaaactcttt
ttctcagcaaaagccgaggcttcaggagagggagatgcgtcgaattatgcagtcaaaatg
catcttgaagacctgatcaatcaagaggacaaaacaaaaccgctttcagatcaaaagctt
gtcgatttgctgtatgaacaacacggcatccaaatctcgagacgcaccgtggcaaaatat
cgcgatcaaatgaatattccgtcatcggcagcgagaaagcgatataaataa
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