Bacillus sp. YP1: QF06_16950
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Entry
QF06_16950 CDS
T03701
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bacy
Bacillus sp. YP1
Pathway
bacy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF06_16950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bacy03021
]
QF06_16950
03019 Messenger RNA biogenesis [BR:
bacy03019
]
QF06_16950
Transcription machinery [BR:
bacy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QF06_16950
Messenger RNA biogenesis [BR:
bacy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QF06_16950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
ATPase_2
AAA_22
AAA
NACHT
EZH2_WD-Binding
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJO60073
LinkDB
All DBs
Position
complement(3439745..3441028)
Genome browser
AA seq
427 aa
AA seq
DB search
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNFLSTRIMDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITANQPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWSIRKTMSDSPDFAEKFMRKMKKTKTNQEFFDILNQEWKQA
NLSSARR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgtatctatttcctctttggaaaatatgaaattgaaagagctttatgaactt
gcaagacattataaaatctcctattacagcaaactgacaaaaaaagaactcattttcgcc
attctgaaagcgaatgcagaacaggaagatctgctgtttatggaaggcgttctcgagatc
atccagtctgaaggtttcggattcctgagaccgatcaactactctccaagctcagaagac
atttacatctcagcttcacaaatccgccgtttcgatttgcggaacggagacaaagtatct
ggcaaggttcgcccgccaaaagaaaatgagcgttactatggacttttgcacgttgaagca
gtaaatggggatgatcccgaatctgcaaaagagcgtgtgcatttcccggctcttacgcca
ctttacccggatcgtcaaatggtgcttgaaacaaagccgaacttcttgtctacaagaatt
atggacatgatggcgccggttggatttgggcagcgcggattgattgttgcgccgccaaaa
gccggaaaaacgatgctgctgaaggaaattgccaacagcattacagcgaaccagcctgaa
gcagagctgatcgtgcttttaattgacgaaagacctgaggaagtaaccgatatcgagcgc
tctgtagctggggatgtcgtcagctcaacgtttgatgaagtgccggaaaaccatatcaaa
gtggccgagcttgtgcttgaacgtgcaatgcgtctcgtggaacacaaaaaagacgtcatt
atcctgatggacagcatcacacggcttgcccgcgcctacaacttagtgattccgccaagc
ggaagaacgctttccggggggattgacccagcggcgttccaccgtccgaaacgcttcttc
ggggctgcgagaaatatcgaagagggcggcagcttaaccatccttgctacggctctggtc
gatacaggttcacgtatggatgatgtcatttatgaagaattcaagggaacaggcaacatg
gagctccatcttgaccgctctcttgccgagcgccgcatcttccctgccatcgatatccgc
cgttcaggaacgcgcaaagaagagctgcttgtgcctaaagagcatcttgatcgtttatgg
tctatccgcaaaacgatgtctgattcacctgatttcgcagaaaagttcatgagaaaaatg
aaaaaaaccaaaacaaaccaggaatttttcgatattctcaatcaagaatggaaacaggca
aatctatcatctgcaagaaggtaa
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