Bacillus sp. YP1: QF06_18025
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Entry
QF06_18025 CDS
T03701
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bacy
Bacillus sp. YP1
Pathway
bacy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QF06_18025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacy03019
]
QF06_18025
03009 Ribosome biogenesis [BR:
bacy03009
]
QF06_18025
Enzymes [BR:
bacy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QF06_18025
Messenger RNA biogenesis [BR:
bacy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QF06_18025
Ribosome biogenesis [BR:
bacy03009
]
Prokaryotic type
rRNA helicases
QF06_18025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJO60282
LinkDB
All DBs
Position
complement(3661491..3662930)
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AA seq
479 aa
AA seq
DB search
MSHFKNYQISHDILRALEGLGYREPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPL
CELADWDENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK
SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML
FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENP
DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA
ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIG
FEIQKIEAPSQEEVARKKPEFLAKLNDRPESKKDKSEELNKDIMKLYFNGGKKKKIRAVD
FVGTIAKIDGVSADDIGIITIMDNASYVEILNGKGPHVLKVMKNTTVKGKQLKVNKANK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagtcattttaaaaactatcaaatcagtcatgacattttacgagcactggaaggacta
ggatatagagaaccgaccaaggtgcagcagagcgtgatccccgctgcccttgaacgaaag
gatcttgtcgtcaaatcacagacgggaagcgggaaaacggcttcgttcggaattcctctc
tgtgagctggcggattgggatgaaaacaagccgcaggcgcttattttaactccaacccgt
gagcttgcggtgcaagtaaaggaagatatcacgaacatcggacgatttaaacgaatcaaa
gcgacagccgtatttggaaaatcctcctttgataaacaaaaagctgagcttaagcaaaaa
agccacattgttgtcggcacgccgggacgtgttctggatcatatcgaaaaaggcacgctt
ccgttggatcgtctctcttatttggtcattgatgaagcggatgagatgctgaatatgggc
ttcattgagcaggtggaggcgattatcaagcatctgccgactgagcgcacgacgatgctg
ttttcagcgacgcttccgcaggatatcgagaagctgagccgtcaatatatgcaaaacccc
gagcatatcgaggtcaaagcggccggcctaaccacaagaaatattgaacatgcggtgatt
caagtaagagaagagaataagttttcattgctgaaagatgtgctgatgacggagaatccc
gacagctgcatcattttctgccgaacgaaggagcacgtcaatcagctgaccgatgaattg
gatgacttaggatatccatgcgataaaattcacggcggaatgattcaggaagaccgattc
gacgtcatgaatgaatttaaacgtggcgagtaccgttacttagtggcaacggatgtcgcc
gcgcgcgggattgatattgaaaatatctcccttgtcatcaactatgatctgccgcttgaa
aaagaaagctatgtccaccgcacgggccgaacgggacgcgcagggaacaaaggaaaggcc
atttcgtttgtcacggccttcgaaaaacggtttttagccgacattgaagaatatatcgga
tttgaaatccaaaaaatagaagccccttctcaagaggaagtggcaaggaagaaaccagaa
tttctagctaaactgaatgaccgtccggaaagcaaaaaggacaaaagcgaagagttgaat
aaagacattatgaagctgtattttaacggcggaaagaaaaagaaaatcagagccgttgat
tttgtaggaacgattgccaaaattgacggtgtgtcagctgacgacatcggcatcatcacg
atcatggataacgcctcatacgttgagattttaaatggtaaaggccctcatgttctcaaa
gtgatgaagaacacaaccgtcaaagggaaacagctgaaggtgaataaagcgaataaatga
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