Bacterioplanoides sp. SCSIO 12839: KFF03_00825
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Entry
KFF03_00825 CDS
T08310
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KFF03_00825 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bacz03021
]
KFF03_00825 (rpoC)
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_00825 (rpoC)
Enzymes [BR:
bacz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KFF03_00825 (rpoC)
Transcription machinery [BR:
bacz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KFF03_00825 (rpoC)
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KFF03_00825 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UTW48480
LinkDB
All DBs
Position
175370..179596
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLVNFLRNQNNADEFDAIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVTEPGMTTLDMGQLLSDEQYYEAIEEFGDEFDAKM
GAEAIEALLGQIDLEEEVNRLREEIPATNSETKIKKLSKRLKILEAFHQSGNDPKWMIMK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYWMTRERVNAKGEGMFLADLEEVSRAYDSG
NAHLQAKVKVRITETVADMDGNMTTETKVVDTTIGRALLFRIVPKGLPYELVNQPMKKKA
ISKLINTAYRRVGLKDTVIFADQVMYTGFQYATKSGSSIGVNDFVIPDEKAEIIANAEAE
VKEIESQFASGLVTHGEKYNKVIDIWSRANELVAKAMMDNLGKEGVIDREGNEVEQESFN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDRDCGTERGLVMTPLIEGGDVVVALGDRIL
GRVVATDVYKPGSEGDIVVPAGTLIDEAWVQTIEAEGIDEVIVRSAITCESRVGICSSCY
GRDLGRGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSVQVKNSGTVR
LHNMKTVTKDNGDLVAVSRSGAIAVADDHGRERELYKLPYGAVISVQDNAAVEAGQKVAS
WDPHTHPIVTEVKGRIEFVGMEEGITINRQTDELTGLSSIEVIDAKDRPAAGKDIRPMVK
LVDASGNDVMLPGTNAPAQYLLPANALVSHEDGTEVSVGDVIARIPQESSGNKDITGGLP
RVADLFEARKPKEPAILAEITGTVSFGKETKGKKRLVITPNDGSEPYEELIHKWRHLNVF
EGEQVEKGEIISDGPLNPHDILRLKGVGDLAMYVTNEVQEVYRLQGVGIDDKHIEVIVRQ
MLRKVLITEAGDSSFIPGDQVEYSNFLAENEKLEEEGKITAKGERVLLGITKASLATESF
ISAASFQETTRVLTEGAVTGKVDTLRGLKENVVVGRLIPAGTGLAYHEERKRKRQDRENE
RLKATPEGLSISAEDMEAKLSEAFSDKL
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttagttaattttctgcgtaatcaaaacaacgctgacgagttcgatgcgatc
cgcatcggcctcgcctcgccggatatgattcgttcctggtcttttggtgaagttaaaaag
ccagaaaccattaactaccgtaccttcaagccagagcgtgatggtctgttctgtgcgcgt
atctttggtccaatcaaagattacgaatgtctgtgtggtaagtacaagcgtctcaagcac
cgtggtgtgatctgtgagaagtgtggcgttgaggtaactcaggcgaaagtacgtcgtgag
cgcatgggtcacattgacctggcgtctccggtggctcacatctggttcctgaagtcactg
ccgtcccgtatcggtctgatgctggatatgacgctgcgtgatatcgaacgtattctgtat
tacgagtccttcgtagtgaccgagcctggcatgacgaccctggatatgggtcagctgctg
agcgacgagcaatactacgaagcgattgaagagtttggtgatgaattcgacgccaaaatg
ggtgccgaagcgatcgaagctctgttaggtcagattgatctggaagaagaagtaaaccgc
ctgcgtgaagaaattccggcgactaactcagaaaccaagatcaagaagctgtctaagcgc
ttaaagatcttagaagccttccatcagtcaggtaacgatcctaagtggatgatcatgaaa
gttctgccggttctgccgccagatctgcgtccactggtacctctggatggcggccgtttt
gcaacgtccgacctgaacgatctgtaccgtcgtgtgatcaaccgtaacaaccgtctgaag
cgtctgttagagctgaatgctccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaatcggttgatgcgttgctggataacggtcgtcgtggtcgtgccattacgggctcgaac
aagcgtccgctgaaatctctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaagcgtgttgactactcaggccgttcggtaattaccgtaggtcctaag
ctgcgcctgcaccagtgtggtctgccgaagaaaatggctctggaactgttcaagccgttc
atcttctccaagctggaacaccgtggtttagcgaccaccatcaaagcagcgaagaagatg
gttgagcgtgagaccgctgaagtttgggatatcctggctgaagtgatccgtgaacaccca
gtgatgctgaaccgtgcaccaacgcttcaccgtttgggtattcaggcattcgaacctcag
ctgatcgaaggtaaagcgattcaactgcacccattagtgtgtgcggcgtataacgctgac
ttcgacggtgaccaaatggcggtacacgtaccgctgaccatcgaagcacagttagaagct
cgtgcgctgatgatggcaactaacaacgtactgtctcctgcgaacggtgagccaatcatc
gtaccatctcaggacgtggtactgggtctgtactggatgacccgtgagcgtgttaacgcc
aaaggcgagggcatgttcctggccgatctggaagaagtaagccgcgcttacgactctggt
aatgctcatctgcaagccaaagtaaaagtacgtattaccgaaaccgttgctgacatggac
ggcaacatgacgaccgaaaccaaagtggtcgataccaccattggtcgtgcattgttgttc
cgcatcgtgccaaaaggtctgccatacgagctggttaaccagccgatgaagaagaaagcg
atctctaaactgatcaacaccgcttaccgccgtgtgggtctgaaagataccgttatcttt
gctgaccaggtgatgtacaccggtttccaatacgcgactaagtcaggttcttccattggt
gtgaacgactttgtgattccggacgaaaaagccgaaatcattgctaacgcagaagccgaa
gtaaaagagatcgaaagccagttcgcttccggtctggtaacccacggtgagaaatacaac
aaggttatcgatatctggtctcgtgccaacgagctggtagcgaaagccatgatggacaac
ctgggtaaagaaggtgtgatcgaccgcgaaggtaacgaggttgagcaggagtccttcaac
tcggtatacatgatggccgactctggtgcacggggtagcccggctcagatccgtcagctg
gccggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaattgtg
gcgaacttccgtgaaggtctgaacgtactgcagtacttcacctcgacccacggtgcgcgt
aaaggtctggccgataccgcattgaagaccgctaactccggttatctgacgcgtcgtctg
gtagacgtagcgcaggatctggtagtaaccgatcgtgactgtggtaccgagcgtggtctg
gtaatgacaccgctgattgaaggtggtgacgttgttgtagcgctgggcgaccgtattctg
ggtcgtgtggttgcaaccgacgtttacaagccaggttctgaaggcgacatcgtagtacca
gccggtaccctgatcgacgaagcctgggtacaaaccatcgaagccgaaggtatcgatgaa
gtgatcgtacgttctgcgattacttgtgaatctcgcgttggtatctgttcaagctgttac
ggtcgtgacctgggtcgcggtcatcaggtgaacgtgggtgaagctgttggtgttatcgca
gcacaatccattggtgagccgggtacacagctgaccatgcgtaccttccacattggtggt
gcggcatcgcgtgcatcggcagccgacagcgttcaggtgaagaactccggtaccgttcgt
ctgcacaacatgaagacagtgaccaaagataatggcgacctggtagcggtttcccgttcc
ggtgcgattgcggttgctgacgatcacggtcgtgagcgcgagctgtacaaactgccatac
ggtgcagtgatttcagtacaagacaacgcggcggttgaagctggccagaaagtggcaagc
tgggatccgcacactcacccaatcgttactgaggtgaaaggtcgtattgaattcgttggc
atggaagaaggtatcaccatcaaccgtcagactgacgaattgactggcctgtcttctatt
gaagtgatcgacgccaaagatcgtccggcggcgggtaaagatattcgtccaatggtgaaa
ctggtggatgcgtcgggtaacgacgtaatgctgccgggtaccaatgcaccagcacagtac
ttactgcctgctaacgcactggtgagccacgaagacggtactgaagtatccgtgggtgac
gtgattgcacgtattccacaagagtcttccggtaacaaagatattaccggtggtctgcca
cgagtggccgacctgttcgaagcgcgtaagccaaaagagcctgctatcctggcagaaatc
acgggtactgtgagcttcggtaaagagaccaaaggtaagaagcgcttagtgattactccg
aacgacggcagcgagccgtatgaagagctgattcacaaatggcgtcacctcaacgtgttc
gaaggtgaacaggttgagaagggtgagatcatctctgatggcccgttaaacccgcacgat
attctgcgcttaaaaggcgtgggcgatctggcgatgtacgtaaccaacgaagtgcaagaa
gtttaccgtctgcaaggtgtaggcattgacgataagcacatcgaagtcatcgtacgtcag
atgctgcgtaaggttctgattactgaagccggtgattccagcttcattccaggtgatcag
gttgagtactctaacttcctggctgaaaacgagaagctggaagaagaaggtaagatcact
gccaaaggcgagcgtgtactgttgggtatcaccaaagcgtctctggcaacagaatccttc
atctccgcagcatcgttccaggaaaccacacgggttctgaccgaaggtgcagtaacgggt
aaagttgataccctgcgcggcctgaaagaaaacgtggttgtgggtcgtctgatcccagcg
ggtactggtctggcttaccacgaagaacgtaagcgtaagcgtcaggatcgtgagaacgag
cgcctgaaagcaacgccagaaggcttaagtatctctgctgaagatatggaagcgaaactg
agcgaagcgttcagcgacaagctgtaa
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integrated database retrieval system
