Bacterioplanoides sp. SCSIO 12839: KFF03_06335
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Entry
KFF03_06335 CDS
T08310
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KFF03_06335 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bacz03400
]
KFF03_06335 (uvrB)
DNA repair and recombination proteins [BR:
bacz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KFF03_06335 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KFF03_06335 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
Kinesin
HEM4
UB2H
AAA_30
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
UTW49506
LinkDB
All DBs
Position
1365693..1367723
Genome browser
AA seq
676 aa
AA seq
DB search
MSKAFELTSKYSPAGDQPNAIKGLVQGIEAGLLKQTLLGVTGSGKTYTMANVIAECQRPT
IIMAHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVPASDTFIDKDASVNEHIE
QMRLSATKALMERRDAVIVATVSAIYGLGDPDSYLKMMLHMVRGDQIDQRTVLRRLAELQ
YTRNDMDFHRGTYRVRGDVIDIFPAESDDEAVRIELFDDEIEQISLFDPLTGEVRSRLAR
VTIYPKTHYVTPRETILGAIDGIEEELKERLEYYRDNNLLVEAQRLEQRTRYDVEMMREL
GYCSGIENYSRYLSGREEGAPPPTLFDYIPKDALVFVDESHVTIPQIGGMYRGDRSRKET
LVQFGFRLPSALDNRPMRFEEWEAIVPQCVFVSATPGPYEQDHQDHVVEQVVRPTGLIDP
ELEVRPATGQVDDVLHELQERTSKGERVLITVLTKRMAEDLTEFLLEQNIRVRYLHSDID
TVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAIFDADKEGFLRSERSLIQTIGR
AARNLNGKAILYADRITDSMQRAMDETDRRRERQIAFNKEHGIVPKGVTKSVEDILEAAP
APGARGKGKGRSRKVAEPAAGYAVDDWKALPAAKLVERVAEVEDQMFKAAKDLDFEEAAR
LRDLLHEMKQKVIENS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagcgttcgaactcacctctaaatattcccccgctggtgatcagcccaatgca
atcaaaggcctggtacagggcattgaggccggattgctgaagcaaaccctactgggggta
acgggctccggaaaaacctacaccatggctaatgtgattgccgagtgtcagcggccaacc
attattatggctcacaacaagacacttgctgcccagttgtatggcgagtttaaagagttt
ttcccgaataatgccgtcgaatatttcgtttcttattacgactattaccagccggaagct
tatgtaccggcatcggatacctttattgataaagatgcgtcggtgaatgagcatatcgaa
cagatgcgcttgtcggcaacaaaagccttgatggagcgccgtgatgcggtgattgttgcc
acggtctcagcgatttatggcttaggtgatccggattcttatctgaaaatgatgctgcat
atggtgcgtggagatcagattgatcagcgtaccgtgttgcgccgtttagccgagttgcag
tacacccgcaacgacatggatttccatcgcggcacctatcgggtacgtggcgatgtgatt
gatattttcccggccgaaagtgacgacgaagcggttcgcattgaattgtttgatgatgaa
attgaacagatttcgctgtttgatccacttaccggcgaagttcgctcgcgcctggcacgg
gtgaccatttatccgaaaacgcattatgtgaccccgcgtgaaaccattctcggtgccatc
gacggcatcgaagaggagttaaaagagcgactggagtactaccgcgataataacttgctg
gtggaagcgcagcgtctggaacagcgtacccgctacgatgttgagatgatgcgtgagctg
ggttattgctccggtatcgaaaactactcacgctatttatctggccgtgaagaaggcgcg
ccgccgccaacactgtttgattacatcccgaaagatgccctggtgtttgtcgacgaatcc
cacgtcaccattccacaaattggtggcatgtatcgtggtgaccgctctcgaaaagaaacg
ctggtgcaatttggctttcgtctgccatcggcactggataatcgcccgatgcgttttgaa
gaatgggaagccattgtgccccagtgtgtgtttgtctctgcaacgccggggccgtatgag
caagaccatcaggaccatgtggtggagcaggtggtacgaccaaccgggttgattgatccg
gaacttgaagtgcgcccggcgacgggtcaggtggatgatgtgctgcacgagctgcaggag
cgtaccagcaaaggcgaacgggtactgattaccgtgctcaccaagcgcatggcggaagac
ctgaccgagtttttactggagcagaatattcgtgtgcgctacctgcattcggatatcgat
acggttgagcgggtggagattatccgcgacttacgattgggtgagtttgatgtgttagtg
ggcattaacttattgcgggaaggtctcgacatccccgaagtctcgctggtggccatcttt
gatgccgataaagaaggattcttgcgttctgaacgttcactgattcagaccattggccgt
gctgcccgtaacctcaatggtaaagcgattttgtatgccgaccgaattactgactcgatg
caacgcgccatggacgaaaccgatcgccgtcgtgagaggcaaattgcctttaacaaagag
cacggcattgtgccgaaaggcgtgaccaaatcggtagaggatattctcgaagccgcaccg
gctccgggagcgcgtggcaagggtaaaggtcgcagccgcaaagtcgcagagcccgcagct
ggctatgcggttgatgactggaaggcattgcccgctgcgaagctggtggagcgtgtggct
gaggtcgaagatcagatgtttaaagccgccaaagacctcgactttgaagaagccgcgcga
ctacgtgacctgttgcatgagatgaagcagaaagttatcgagaacagttaa
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