Bacterioplanoides sp. SCSIO 12839: KFF03_08440
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Entry
KFF03_08440 CDS
T08310
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Pathway
bacz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFF03_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacz03019
]
KFF03_08440
03009 Ribosome biogenesis [BR:
bacz03009
]
KFF03_08440
Enzymes [BR:
bacz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KFF03_08440
Messenger RNA biogenesis [BR:
bacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KFF03_08440
Ribosome biogenesis [BR:
bacz03009
]
Prokaryotic type
rRNA processing factors
KFF03_08440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UTW49893
UniProt:
A0A9J7AMU1
LinkDB
All DBs
Position
complement(1828671..1831514)
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AA seq
947 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQKLYDLDIEPGTREQKKANIYKGKITRIEPSLEAAFVDF
GAERHGFLPLKEIAREYFVKDPGPGRINIKDVVREGQEIIVQVDKEERGNKGAALTTQVS
LAGRYLVLMPTNARAGGISRRIEGDERTQLREAMKGVQVPDKMGVIVRTAGIGRSSEELQ
ADLDYLVNVWSAIQRASENLSAPYLLLQESNVIIRAIRDYLRQDIGEVLIDTQEAFDEAI
AFVQQVIPQSEGKFKLYQDSVPLFNRYQIETQIESAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGADIEETALNTNLEAADEIARQLRLRDMGGLVVIDFIDMMANKNQREVESR
LKKALEMDRARVQVGRISRFGLVEMSRQRLRPSLGETSGHVCPRCSGTGVIRDIQSSGLS
ILRLIEEEAAKENTGQIRAIVPVPVASFLLNEKRNLIAAIEARHNSKVLVLPNPHMETPH
YEVLRLRPDDSLIEEVSYEQKLDAGEVEYGVDIAKPEAAAPQQTAAVRGVQRKAAPTPEA
QSFWSKLGSALTSLFEGSSDKEEKETEQKNKPNNKGRKGQNNQNRDRKNGSNNRRNGQRQ
DKRQDARSEKSDDNRNRNRQDRDGERGQSNDNRRKQNDNRRSENRNDDTKRKSDKNETRK
QERSGQDRTNQDRNKDQDNQEGRAPRRDRSKGENPRRRREPREKSNEPSEVVVTASGEKK
EAQAAIASEATILETPKTESEERKPRRERRSRRRNKSDKPEAGSNSEVKATPEAKTTSEV
KHSDEAPTADAPAKTESSVEAAAPEQAKAEAAKAQPAQETTETVSAEPQVEAATEEKPRR
RNTRRRRRQGDDSQNSASDVSQTQETKAPEEAKAAEPTVKTEAPAEVKAEPTPVTEQTAP
ETEQPKAESDNSDEGNNKGRRRSRRRSGGRASNDPRNAQASQETEAE
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaactcaatctgaagaattgcgtgtagcccttgtagac
ggacaaaaactttacgacctggatattgaacccggcactcgtgaacagaaaaaagccaat
atctataaaggcaaaatcacccgtattgagcccagcctggaagcggcttttgtcgacttt
ggtgccgagcgccatggctttctgccgctgaaagaaatcgcccgcgaatacttcgtaaaa
gatccaggccctggccgtatcaacatcaaagatgtggtacgtgaaggtcaggaaatcatc
gttcaggttgataaagaagagcgtggaaacaagggtgccgccctcaccacacaagtcagc
ctggctggtcgctatctggtgctgatgccaaccaacgctcgtgcaggtggtatttcacgc
cgtatcgaaggcgatgagcgcacccaactgcgtgaagccatgaaaggtgttcaggtgccg
gacaaaatgggcgttatcgtccgtaccgctggcattggccgcagctctgaagagcttcag
gctgacctggattatctggttaatgtctggtccgctatacaacgtgcctcagagaacctg
agcgctccttacctgctcctgcaggaaagcaacgttattatccgtgcgattcgcgactac
ttgcgtcaggacatcggcgaagtactgatcgatacccaggaagccttcgacgaagccatt
gcttttgtgcaacaggtgatcccgcaatccgaaggcaagttcaagctgtaccaagacagc
gtaccgctgtttaaccgctaccagatcgagactcagatcgaaagcgccttccagcgtgaa
gtgaaactgccctccggcggctcgattgtcatcgacccgactgaagccctggtatccatc
gatatcaactctgcccgtgccactaagggtgcagacattgaagaaacggcactgaacact
aacctggaagccgccgatgagattgcccgtcaattgcgcctgcgcgatatgggcggcttg
gtcgtgatcgatttcatcgacatgatggccaacaaaaatcagcgtgaagttgaatctcgc
ctgaaaaaagcgttagaaatggatcgcgcccgtgttcaggttggtcgtatttcccgcttc
ggcctggtagaaatgtcgcgtcagcgcctgcgtccttccctgggtgaaaccagcggacac
gtttgcccacgctgtagcggcaccggtgttatccgcgacatccaatcttccggcctgtct
atcttgcgcctgattgaagaagaagccgccaaagaaaataccggtcagattcgtgccatt
gttcctgttccggttgccagcttcctgctgaacgaaaaacgcaacctgattgccgctatc
gaagcacgccataacagcaaagtactggtactgccaaacccacatatggaaacgccgcat
tacgaagtattgcgtctgcgccctgatgacagcctgatcgaagaagtcagctacgaacaa
aaactggatgccggcgaagtggaatatggcgttgatatcgccaagccagaagctgcagca
ccacagcaaactgctgcggtaagaggtgtacaacgcaaagcagctccaacaccggaagcc
cagagcttttggtcaaaactgggcagtgctctgacatcactgtttgaaggctcttctgac
aaagaagaaaaagaaaccgagcagaaaaacaagccaaataataaaggtcgcaaaggtcag
aacaaccagaaccgtgatcgtaaaaatggctcaaacaatcgtcgtaacggtcagcgccag
gacaaacgtcaggatgcccgttctgaaaagagcgatgacaaccgcaatcgcaaccgtcag
gatcgcgatggtgaacgtggtcaatcaaacgacaatcgccgcaagcaaaatgacaatcgt
cgctcggaaaatcgtaacgacgacacgaaacgcaagtcggacaaaaacgagacacgcaaa
caagagcgtagcggccaggatcgcactaaccaagaccgcaacaaggatcaggacaaccag
gaaggccgcgcaccgcgtcgcgatcgcagcaaaggcgagaacccacgtcgccgccgcgag
ccacgcgagaagtcgaatgagccatccgaagtggtagtaacagcctctggtgagaaaaaa
gaagcacaagcggctatcgccagcgaagcaaccattctggagacaccaaagactgaaagc
gaagagcgtaagcctcgtcgtgagcgtcgcagtcgtcgccgtaacaagtctgataaaccc
gaagctggtagtaactcggaagtgaaagctactcctgaagcaaaaacgacttctgaagta
aaacacagtgacgaagcaccaactgcggatgcaccggcaaaaacagaatcttcggtagag
gcagcagcgccagagcaagcgaaggcagaagcagcgaaagctcagccagcacaagaaacg
actgagacagtcagcgccgagccacaagtcgaagcggctactgaagagaagccacgtcgc
cgtaatactcgtcgccgtcgccgccagggagatgattcacaaaacagtgcatcagatgtc
agccagactcaggagacaaaagctccggaagaagccaaagcagcagaaccgacagtaaaa
actgaagctcctgctgaagtaaaagctgagcccacccccgtaactgagcaaactgcgcct
gaaaccgaacagccgaaggctgaatcggacaactctgatgaaggcaataacaaaggtcgc
cgtcgtagccgtcgtcgcagcggcggacgtgcatcgaatgacccacgcaatgcacaggcc
tctcaggaaacggaagctgagtaa
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