Bacterioplanoides sp. SCSIO 12839: KFF03_10070
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Entry
KFF03_10070 CDS
T08310
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bacz
Bacterioplanoides sp. SCSIO 12839
Brite
KEGG Orthology (KO) [BR:
bacz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bacz03019
]
KFF03_10070 (hrpA)
Enzymes [BR:
bacz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KFF03_10070 (hrpA)
Messenger RNA biogenesis [BR:
bacz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KFF03_10070 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
ResIII
AAA_30
nSTAND3
T2SSE
SLFN-g3_helicase
NACHT
PhoH
AAA_16
ABC_tran
SRP54
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
UTW50091
UniProt:
A0A9J7ALK3
LinkDB
All DBs
Position
complement(2194219..2198157)
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AA seq
1312 aa
AA seq
DB search
MNRGADIKALYQAIDHCLIKDRFPLRRSVRQIKTLLEENKPFDKVLEKLLIRIQKSQELV
KLRSQPLPVSYPDLPVSERKDEILKAVKENQVVVVAGETGSGKTTQLPKVCLEAGLGVYG
RIAHTQPRRLAARAVAGRIAEELQCQLGNQVGFQVRFTDQSSDQTRIKLMTDGILLAQTQ
HDKFLNEYDVIIIDEAHERSLNIDFLMGYLKQLLPKRPDLKVIITSATIDVERFSKHFAD
ANGKPAPVIEVSGRTYPVETRYRPLVREDEEGEDRSLFEGIADALAELRGEDKAKGQHGD
VLVFLPGEREIRECAEFLRRAQLPATDILPLYARLSAGDQQKIFKPQGGRRVVLSTNVAE
TSLTVPGIRYVVDSGIARISRYSYRSKVQRLPIEAISQASANQRAGRCGRVAPGVCIRLY
EESDFLGRDEFTDPEIRRTNLAAVVLQMLHLKLGKLQDFPFVDAPDERFVKDGFTLLQEL
EAVDSCQNLTELGRQMARLPVDPRIARMMLEAQKQQALKEVLIIAAALTVQDPRERPPEK
QQQSDEKHRIWKDEDSDFVSLLNLWNGFEEQRQELSQNQLRKWCAKYFLNYMRMREWRDT
HRQLHILCKDLGLEEKEQAASYESLHKSLLSGMLSQIGFKSEGSQSNPGEYLGARNRKLW
IFPASGQYKKKPKWMMTAELVETSKLYARTVAKIEPQWIEEIGKPLLKYQYFEPHWQSQR
GQVVAFEQSTLYGLIVNPKKRVNYANTHPEAAREILIQEALVEQKIRTKAEFYQKNLQLL
AEVTEYEEKSRRRDLVIDDAYLAEFYNKALPDHIVTTKHLERWFSKAKEAEKQALYFTRD
FLLSPEAAGVGASDYPTELDWQGMAFPLSYSFAPGTSDDGVSLSVPVAMLQQVPEAQTEW
LVPGFIEDKVVALIKGLPKTIRKRFVPVPNTAQTFLAQHSPSGGGLIAQLLNYLNKDLRP
EQIDSEQLTATELPDHLRMNIRVMADRKLIAQGRDLAALKEQYADASQAQIQDLSHSGFQ
RDQINGWDFGDLPQTTQTEVNGLPVRAFPCLKPAKEKSEKTDIQLTVEADEFEAARQHRL
GVCQLVRRQLPDQERTLKSHIQQTMKGKWLYCKGLGSEAEITADLIQAAFIQVFVPSDEP
LPYLEQEFKQRLDRRSELFEHGTKLLTQFIEWITLRHKILKTMGGAVSLDKAMAYSDVKA
HLERLLSKGFMQQTPWQRLQSFSRYLKAMDYRLDKLQGNLPRDRQSMIEFESLYKNYTDV
LNKLSPRISDELEEFGWLLEEWRVSLFAQPLGTKEPVSLKRLQKRWAEIAKT
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atcaatcgtggtgcagatattaaagccttatatcaggcgattgatcattgcctgatcaaa
gatcggtttccgttacgtcgcagtgtgcgccagatcaaaaccttgctggaagagaacaaa
ccctttgataaggtgctggagaagctgctgattcgtattcagaaaagtcaggagctggtt
aagctgcgttctcagccgctgccggtcagttatccggatttgccggtttccgagcgaaaa
gacgaaatccttaaggcggttaaagaaaatcaggtggtggtggtcgcgggtgaaaccggt
tccggtaaaaccactcagttgccaaaggtctgcctggaagccgggttaggggtctatggc
cgcattgcccacactcagccgcgtcgtttagccgctcgtgcggtggcagggcgcattgcc
gaagaactgcagtgtcagttgggcaatcaggtgggttttcaggtgcggtttacggatcag
agtagcgatcagacgcgtattaagctgatgactgacggcattttgctggcccagactcag
cacgataagtttctgaatgaatacgacgtcattatcatagacgaagcccatgagcgcagc
ctgaatattgattttctgatgggctatttaaaacagttgttgcccaagcgcccagactta
aaggtcattattacctcagccaccattgatgttgagcgtttctcgaaacacttcgctgat
gctaatggcaagcctgcgccggtcattgaggtatcaggccgaacctatccggtagaaacc
cgttatcgtcctcttgttcgggaagacgaagagggtgaagatcgttctttatttgaaggc
attgccgatgcgctggcggaattacgcggtgaagacaaagccaagggtcagcatggcgac
gtactggtgtttttaccaggagagcgcgaaattcgggaatgcgcggaattcttgcgccga
gcgcagttacccgctactgacattctgccgctctatgcgcgcttaagtgcgggcgaccaa
cagaagatctttaagccccaaggcggtcgccgagtggtgctgtcaaccaacgtggcggaa
acctcgttaacggtgccggggattcgttatgtcgttgactccggtatcgcccgtatcagt
cgttacagttatcgcagcaaagtgcagcgtttaccgattgaagccatttctcaggccagt
gctaatcagcgtgctggacgttgtggccgggttgctccgggtgtgtgtattcgtctgtac
gaagagtctgactttttaggacgggatgaatttaccgatccggaaattcgtcggactaac
ctggcggccgttgtgctgcaaatgctgcatctgaaattgggcaagttacaggacttcccg
tttgttgatgccccggacgaacgctttgttaaagatggctttaccttgctacaggagctg
gaagccgttgatagttgccaaaatctgaccgaattgggccgtcagatggctcgcttgccg
gttgatccacgcattgcccggatgatgctggaggcacaaaagcagcaggcattaaaagaa
gtgttgatcattgccgcggcgctaacggtacaagacccgcgcgaacgaccaccggaaaaa
cagcagcagtcggatgaaaaacaccgaatctggaaagacgaagactccgactttgtcagc
ctgttaaacctgtggaatggctttgaagaacagcgtcaggagttatcacaaaatcagctg
cgtaagtggtgtgcgaaatatttccttaactacatgcgaatgcgcgagtggcgtgatacc
catcgtcagttgcatatcttatgtaaggacctggggctggaagaaaaagagcaagcggcc
agttacgaatcgctgcataagtcgctgttgtccggcatgttaagccagatcggcttcaag
tctgaaggctctcaatcaaacccaggggagtatttgggtgcccgtaaccgcaaactctgg
atcttcccggcgtcaggtcaatataagaaaaagcctaaatggatgatgaccgccgagctg
gtggaaacctcgaagctgtatgcccgcaccgtcgccaaaattgagccgcaatggattgaa
gaaattggtaagccgctgctgaaatatcagtattttgaaccgcactggcaaagccagcgt
gggcaagtggtggcgtttgaacaaagcaccttatatggcctgattgtgaacccgaaaaag
cgggtgaactacgccaatactcacccagaagccgcccgtgagattctgattcaggaagcc
ttggtggaacagaagatccgcaccaaagccgaattctaccagaagaatctgcaactgctg
gctgaagtcaccgaatacgaagagaaatctcgtcgccgtgacctggtgattgatgatgcc
tatctggcggagttttataacaaagcgctgccggatcatatcgtcaccactaagcacctg
gagcgttggttctctaaggcaaaagaggctgaaaagcaggcgttatattttacccgcgac
tttttgctcagcccggaagcggcgggcgttggtgccagtgattatccaaccgagctggac
tggcagggcatggcattccccttgagttatagctttgcaccaggaacttccgatgacggg
gtgtcgctgagtgtgccggtggccatgttgcagcaggtgccggaagcacaaaccgaatgg
ctggtaccgggctttatcgaagacaaagttgtggctctgattaaaggtttacccaagacg
attcgtaagcgttttgtgccggtgccgaataccgctcagacttttctggcgcaacatagc
ccttccggtggtggtctgattgctcagttgctgaattatttaaacaaggatttacgcccg
gagcagattgatagcgagcagctgacggcaaccgaattgcccgatcatctgcgcatgaat
atccgggtgatggctgatcgcaagctgattgctcaggggcgtgacctggccgctttaaaa
gaacagtacgctgatgcttcacaagcccagattcaggatctgagtcattccggcttccag
cgcgatcagatcaatggctgggactttggtgatttgccacaaaccacacaaaccgaagtg
aatggcttgccagtgcgcgctttcccttgtttaaagcccgccaaagagaagtcagaaaaa
accgatattcagctcaccgtggaagcggatgagtttgaggccgcacgccagcatcgttta
ggtgtgtgtcagctggttcgtcgtcagttaccggatcaggagcggacgctgaaatcgcat
atacagcaaaccatgaaaggaaaatggctgtattgcaaaggtcttggcagtgaagcagag
atcaccgcagacctgattcaagcggcttttattcaggtgtttgtaccatcagatgagccg
ctgccttatctggaacaggagtttaaacagcgcttagatcgacgctcggagctgtttgaa
cacggcaccaagctgttaacccagtttattgaatggatcacattgcgtcataaaattctg
aaaaccatgggcggagccgtaagcctggataaggccatggcgtattcggatgtgaaggcg
catctggaacgcttgctgagcaaaggctttatgcagcaaacgccgtggcagagattgcaa
agttttagtcgttatctcaaggccatggattatcgactggataaattgcaggggaattta
ccacgcgatcgacagtcaatgattgagttcgaaagtttgtacaaaaattacacggatgtc
ctcaataagttgtctccgcgcattagcgatgaactggaagaatttggctggttgctggag
gagtggcgggtatcgctgtttgctcagccgctgggcactaaagaaccggtttcgcttaag
cggttacaaaaacgatgggctgaaattgccaagacctga
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